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1. harissa harissa Public

   Tools for mechanistic gene network inference from single-cell data

   Python 7 1

2. fluffyclone fluffyclone Public

   Using the weighted uniform distribution over spanning trees

   Python

3. harissa-framework/harissa harissa-framework/harissa Public

   Simulation and inference of gene regulatory networks based on transcriptional bursting

   Python 2

4. multistate multistate Public

   Stochastic gene expression with multistate promoters

   Python

5. eliasventre/cardamom eliasventre/cardamom Public

   Python 3 1

6. grnviz grnviz Public

   Visualization of gene co-expression and regulatory networks

   Python