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tiagoams committed May 16, 2024
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Expand Up @@ -735,17 +735,29 @@ <h2 id="note-wifi-access-for-cefas-staff">Note: WiFi access for Cefas staff</h2>
<h2 id="laptop-installation">Laptop Installation</h2>
<p>For this course you will need to have Python installed on your laptop, including some extra packages. Follow the instructions below to set up your Python environment. Make sure you do this do this <strong>before</strong> the course, including running the test as below. There will be a troubleshooting session on the first day at 8:30 as advertised in the invite email.</p>
<p>As an alternative you can use cloud hosting by <a href="https://mybinder.org/v2/gh/ueapy/pythoncourse2024-materials/main?urlpath=lab"><img alt="Binder" src="https://mybinder.org/badge_logo.svg" /></a> to run all the lessons with the data here contained (it is not possible to load your own data), but any changes made won't be saved.</p>
<p>Feel free to contact <a href="mailto:jennifer.graham@cefas.co.uk">Jenny at Cefas</a> or <a href="mailto:[email protected]">Eliza at UEA</a> if you have any problems with the installation (but better do an internet search first!)
<p>Feel free to contact <a href="mailto:claire.beraud@cefas.co.uk">Claire at Cefas</a> or <a href="mailto:[email protected]">Eliza at UEA</a> if you have any problems with the installation (but better do an internet search first!)
Note: The course is designed in Python 3.9 but even if you have a different version installed, 3.9 will be installed when creating a conda environment in step 3 below.</p>
<h2 id="1-install-python-distribution">1. Install Python distribution</h2>
<h3 id="11-cefas-users">1.1. Cefas Users</h3>
<p>You will neet to request in advance a temporary administrator password to make the installation. </p>
<p>As a government organisation we do not have free access to Anaconda, so please use the free alternative mambaforge. For those in academia, we also recommend this as a more lightweight (and often faster) python installation option! </p>
<ul>
<li>
<p><a href="https://github.com/conda-forge/miniforge#mambaforge">Download Mambaforge for your OS</a> </p>
</li>
<li>
<p>After downloading, follow the instructions as suggested <a href="https://github.com/conda-forge/miniforge#install">here</a></p>
</li>
</ul>
<h3 id="12-students-or-uea-staff">1.2. Students or UEA Staff</h3>
<p>1.2.1. <a href="https://www.anaconda.com/download/">Download Anaconda with Python 3 for your OS</a>. </p>
<p>1.2.2. Install it following <a href="https://docs.anaconda.com/anaconda/install/">these instructions</a>. Be sure to select install "just me" when prompted.</p>
<ul>
<li>
<p><a href="https://www.anaconda.com/download/">Download Anaconda with Python 3 for your OS</a>. </p>
</li>
<li>
<p>Install it following <a href="https://docs.anaconda.com/anaconda/install/">these instructions</a>. Be sure to select install "just me" when prompted.</p>
</li>
</ul>
<h3 id="13-uea-hpc-ada">1.3 UEA HPC (Ada)</h3>
<p>If you already have an account on Ada, then it would be possible to run the Jupyter notebooks of the lessons by starting a session on <a href="https://adaood01.uea.ac.uk/">Ada OnDemand</a>. You can try to follow the instructions for laptops for copying and running the lessons, but we won't be able to provide specific support, and so the preferred method is to use your laptop or MyBinder. </p>
<h2 id="2-download-course-materials">2. Download course materials</h2>
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