Code

3.1: 3D plotting + Triangle meshes#177

Code

Merged

holl- merged 133 commits intomastertum-pbs/PhiFlow:masterfrom developtum-pbs/PhiFlow:developCopy head branch name to clipboardOct 6, 2024

+1,919-2,082

Commits

Commits on Aug 9, 2024

• [doc] Update Smoke_Plume.ipynb

  holl-

  committed
  efde363

  Copy full SHA for efde363

• [geom] Fix Mesh.__variable_attrs__()

  holl-

  committed
  882f058

  Copy full SHA for 882f058

• [physics] Fix make_incompressible() for FVM

  holl-

  committed
  b5fb071

  Copy full SHA for b5fb071

• [tests] Add FVM test

  holl-

  committed
  df014ef

  Copy full SHA for df014ef

• [Φ] Update PhiML requirement to 1.7.1

  holl-

  committed
  3210429

  Copy full SHA for 3210429

• [field] Fix Field.__eq__

  holl-

  committed
  c5dffa2

  Copy full SHA for c5dffa2

• [field] Fix Field.shape

  holl-

  committed
  c119a04

  Copy full SHA for c119a04

• [Φ] Bump version to 3.0.1

  holl-

  committed
  611b080

  Copy full SHA for 611b080

• [geom] Add Box.sample_uniform_surface()

  

  Philipp Holl

  committed
  49cb072

  Copy full SHA for 49cb072

• [field,geom] Move sample_function to phi.geom

  

  Philipp Holl

  committed
  2abe80e

  Copy full SHA for 2abe80e

• [geom] Fix embed() dim order

  

  Philipp Holl

  committed
  49814af

  Copy full SHA for 49814af

• [vis] Add transparent arg to savefig()

  

  Philipp Holl

  committed
  670a6ec

  Copy full SHA for 670a6ec

• [vis] Allow size=None

  

  Philipp Holl

  committed
  b680e52

  Copy full SHA for b680e52

• fixup transparent

  

  Philipp Holl

  committed
  4b29816

  Copy full SHA for 4b29816

• [geom] Fix SDFGrid, add dx

  

  Philipp Holl

  committed
  3739478

  Copy full SHA for 3739478

• [geom] Allow Cuboid for bounds

  

  Philipp Holl

  committed
  c2a28d7

  Copy full SHA for c2a28d7

• [vis] 2D SDFGrid with Plotly

  

  Philipp Holl

  committed
  2b0006d

  Copy full SHA for 2b0006d

• [vis] 3D SDF with Plotly

  

  Philipp Holl

  committed
  0fa5c03

  Copy full SHA for 0fa5c03

• [vis] Avoid initial matplotlib import

  

  Philipp Holl

  committed
  73f6710

  Copy full SHA for 73f6710

• [vis] Plot single value as bar

  

  Philipp Holl

  committed
  c6a5937

  Copy full SHA for c6a5937

• [geom] Add SDF

  

  Philipp Holl

  committed
  0f0c3a1

  Copy full SHA for 0f0c3a1

• [geom] Add surface_mesh(), as_sdf()

  

  Philipp Holl

  committed
  aa09d70

  Copy full SHA for aa09d70

• [geom] Allow non-Graph verticies in Mesh

  

  Philipp Holl

  committed
  4746906

  Copy full SHA for 4746906

• [vis] Plotly animations

  

  Philipp Holl

  committed
  4f06470

  Copy full SHA for 4f06470

• [vis] Plotly plot triangle meshes

  

  Philipp Holl

  committed
  f8dd91b

  Copy full SHA for f8dd91b

• [vis] Don't require per-element bounds when determining size

  

  Philipp Holl

  committed
  d4722b1

  Copy full SHA for d4722b1

• [vis] Improved Jupyter detection

  

  holl-

  authored and

  Philipp Holl

  committed
  bc52c06

  Copy full SHA for bc52c06

• [vis] Plotly cubes and spheres

  

  holl-

  authored and

  Philipp Holl

  committed
  536e370

  Copy full SHA for 536e370

• [vis] Use Plotly for 3D plots by default

  

  holl-

  authored and

  Philipp Holl

  committed
  176990a

  Copy full SHA for 176990a

• [vis] Determine colors before dispatching plot

  

  holl-

  authored and

  Philipp Holl

  committed
  534d9be

  Copy full SHA for 534d9be

• [vis] Return figure directly if single figure plotted

  

  Philipp Holl

  committed
  888cb41

  Copy full SHA for 888cb41

• [vis] Fix plot limits

  

  Philipp Holl

  committed
  ac67a51

  Copy full SHA for ac67a51

• [vis] Optimize plotly to video

  

  Philipp Holl

  committed
  4c5d84d

  Copy full SHA for 4c5d84d

• [geom] Add box type hints

  

  Philipp Holl

  committed
  12ca531

  Copy full SHA for 12ca531

• [vis] Determine colors before dispatching plot

  

  holl-

  authored and

  Philipp Holl

  committed
  af55c20

  Copy full SHA for af55c20

• [vis] Support 2D SDF in Matplotlib

  

  Philipp Holl

  committed
  550c8f3

  Copy full SHA for 550c8f3

• [geom] Fix sample_function() for vararg functions

  

  Philipp Holl

  committed
  433448c

  Copy full SHA for 433448c

• [geom] Make SDF shapable

  

  Philipp Holl

  committed
  a623f06

  Copy full SHA for a623f06

• [geom] Defaults for SDFGrid constructor + fix

  

  Philipp Holl

  committed
  9f68ea5

  Copy full SHA for 9f68ea5

• [geom] Fix Heightmap.shape

  

  Philipp Holl

  committed
  4de8a99

  Copy full SHA for 4de8a99

• [geom] Fix union()

  

  Philipp Holl

  committed
  6f71191

  Copy full SHA for 6f71191

• [geom] Add separate to as_sdf()

  

  Philipp Holl

  committed
  1150d72

  Copy full SHA for 1150d72

• [geom] Rename sdf_from_geometry to sample_sdf

  

  Philipp Holl

  committed
  3085e1c

  Copy full SHA for 3085e1c

• [field] Add dim to field.mean()

  

  Philipp Holl

  committed
  0a8e4e0

  Copy full SHA for 0a8e4e0

• [vis] User-defined subfigure limit

  

  Philipp Holl

  committed
  e16694f

  Copy full SHA for e16694f

• [vis] Automatic default figure size

  

  Philipp Holl

  committed
  11f0228

  Copy full SHA for 11f0228

• [geom] Add numpy_sdf()

  

  Philipp Holl

  committed
  1635fe8

  Copy full SHA for 1635fe8

• [geom] Add SDFGrid.with_values()

  

  Philipp Holl

  committed
  9bfc30e

  Copy full SHA for 9bfc30e

• [geom] Add scale()

  

  Philipp Holl

  committed
  e3b53c9

  Copy full SHA for e3b53c9

• [geom] Mesh: make build_faces optional

  

  Philipp Holl

  committed
  2ac6756

  Copy full SHA for 2ac6756

• [geom] Implement Triangle mesh SDF

  Show description for 6181c8c
  

  Philipp Holl

  committed
  6181c8c

  Copy full SHA for 6181c8c

• [vis] Plotly 3D aspect, improved surface plotting

  

  Philipp Holl

  committed
  2dda352

  Copy full SHA for 2dda352

• [field] Fix Noise

  

  Philipp Holl

  committed
  6703367

  Copy full SHA for 6703367

• [field] Add Field.sample()

  

  Philipp Holl

  committed
  d71399f

  Copy full SHA for d71399f

• [geom] Update sample_sdf() defaults

  

  Philipp Holl

  committed
  56be7d0

  Copy full SHA for 56be7d0

• [geom] Compute trimesh volume

  

  Philipp Holl

  committed
  f80c04f

  Copy full SHA for f80c04f

• [geom] sdf_and_gradient()

  

  Philipp Holl

  committed
  511cd02

  Copy full SHA for 511cd02

• [geom] Add Geometry.sets

  

  holl-

  authored and

  Philipp Holl

  committed
  88965a0

  Copy full SHA for 88965a0

• [vis] Plotly 3D meshes with vertex intensity

  

  holl-

  authored and

  Philipp Holl

  committed
  2463936

  Copy full SHA for 2463936

• [geom] Add internal save_tri_mesh,load_tri_mesh

  

  holl-

  authored and

  Philipp Holl

  committed
  5f4520b

  Copy full SHA for 5f4520b

• [vis] Refactor show()

  Show description for e6953b7
  

  Philipp Holl

  committed
  e6953b7

  Copy full SHA for e6953b7

• [vis] Fix Plotly VectorCloud3D color

  

  Philipp Holl

  committed
  4110677

  Copy full SHA for 4110677

• [geom] Add Mesh.vertex_connectivity, filter_unused_vertices()

  

  Philipp Holl

  committed
  72d065a

  Copy full SHA for 72d065a

• [vis] Fix Plotly animation

  

  Philipp Holl

  committed
  4a0b83d

  Copy full SHA for 4a0b83d

• [geom] Annotate problems in _heightmap.py

  

  Philipp Holl

  committed
  8b66712

  Copy full SHA for 8b66712

• [vis] Fix plot for geometries with special sample points

  

  Philipp Holl

  committed
  d1566a2

  Copy full SHA for d1566a2

• [geom] Add graph() constructor

  

  Philipp Holl

  committed
  bdf4cea

  Copy full SHA for bdf4cea

Commits on Aug 12, 2024

• [geom] Add Mesh.vertex_connectivity

  Show description for 4ebbf73
  

  Philipp Holl

  committed
  4ebbf73

  Copy full SHA for 4ebbf73

• [geom] Add Mesh.element_connectivity

  

  Philipp Holl

  committed
  1b836c2

  Copy full SHA for 1b836c2

Commits on Aug 14, 2024

• [geom] Add closest_on_triangle()

  

  Philipp Holl

  committed
  a0976d0

  Copy full SHA for a0976d0

• [geom] Add Mesh.normals

  

  Philipp Holl

  committed
  897f956

  Copy full SHA for 897f956

• [vis] Plotly 3D line plot

  

  Philipp Holl

  committed
  36d1004

  Copy full SHA for 36d1004

• [geom] Add Mesh.vertex_normals, vertex_positions

  

  Philipp Holl

  committed
  c98b72d

  Copy full SHA for c98b72d

Commits on Aug 18, 2024

• [geom] Make Mesh normals optional, expose element_rank

  

  Philipp Holl

  committed
  7b6940d

  Copy full SHA for 7b6940d

• [geom] Fix surface_mesh()

  

  Philipp Holl

  committed
  9547286

  Copy full SHA for 9547286

Commits on Aug 19, 2024

• implement sample_uniform in Sphere class

  

  crackalamoo

  authored and

  holl-

  committed
  ef5168f

  Copy full SHA for ef5168f

• [tests] Add unit test for Sphere.sample_uniform()

  holl-

  committed
  4a94c3f

  Copy full SHA for 4a94c3f

Commits on Aug 20, 2024

• [geom] Add vector dim to NoGeometry

  

  Philipp Holl

  committed
  5a37b24

  Copy full SHA for 5a37b24

• [geom] SDF fixes

  

  Philipp Holl

  committed
  f82c5e0

  Copy full SHA for f82c5e0

Commits on Aug 21, 2024

• [geom] Fix Mesh face_curvature()

  

  Philipp Holl

  committed
  d94d92a

  Copy full SHA for d94d92a

• [geom] Allow NoGeometry in decimate_tri_mesh()

  

  Philipp Holl

  committed
  9c58e5d

  Copy full SHA for 9c58e5d

• [doc] Update plane_sgn_dist docstring

  

  Philipp Holl

  committed
  3db9f27

  Copy full SHA for 3db9f27

Commits on Aug 22, 2024

• [geom] Add _marching_cubes.py

  

  Philipp Holl

  committed
  8dd7b60

  Copy full SHA for 8dd7b60

Commits on Aug 24, 2024

• [geom] add intersection of geometries

  

  crackalamoo

  authored and

  holl-

  committed
  7f4cca8

  Copy full SHA for 7f4cca8

• [tests] add unit tests for geometry intersection

  

  crackalamoo

  authored and

  holl-

  committed
  d6d2368

  Copy full SHA for d6d2368

• [doc] add geometry intersection to documentation

  

  crackalamoo

  authored and

  holl-

  committed
  9a3807d

  Copy full SHA for 9a3807d

• [geom] Implement intersection SDF, bounding_box

  holl-

  committed
  dc91b0c

  Copy full SHA for dc91b0c

• [vis] Support plot intersection in Matplotlib

  holl-

  committed
  ff4fef5

  Copy full SHA for ff4fef5

• [Φ] Drop support for Python 3.9 and below.

  Show description for 8ed0d1b
  holl-

  committed
  8ed0d1b

  Copy full SHA for 8ed0d1b

Commits on Aug 31, 2024

• [field] Fix Field init

  

  Philipp Holl

  committed
  2348d8b

  Copy full SHA for 2348d8b

• [geom] Various minor fixes and additions

  

  Philipp Holl

  committed
  113c4a9

  Copy full SHA for 113c4a9

Commits on Sep 4, 2024

• [vis] Fix Plotly plot Cuboid

  

  Philipp Holl

  committed
  82e4dbd

  Copy full SHA for 82e4dbd

• [vis] Plotly multi-channel 3D scatter plots

  

  Philipp Holl

  committed
  f1c9b26

  Copy full SHA for f1c9b26

• [geom] Fix Box.lies_inside() for when the location shares instance dims with the geometry

  

  Philipp Holl

  committed
  a8b959b

  Copy full SHA for a8b959b

• [geom] Add bounds to as_sdf(), default to 'closest-face'

  

  Philipp Holl

  committed
  20aa397

  Copy full SHA for 20aa397

Commits on Sep 8, 2024

• [Φ] Add basic math functions to convenience imports

  Show description for abf143b
  holl-

  committed
  abf143b

  Copy full SHA for abf143b

• Merge branch 'develop' into 3d

  Show description for 2f55b39
  holl-

  committed
  2f55b39

  Copy full SHA for 2f55b39

• [Φ] Fix convenience imports for PhiML 1.8 and below

  holl-

  committed
  a5979a4

  Copy full SHA for a5979a4

• [tests] Update test__plots.py

  holl-

  committed
  aa1f4f1

  Copy full SHA for aa1f4f1

• fixup merge

  holl-

  committed
  35eb9a2

  Copy full SHA for 35eb9a2

• [geom] Expose graph() constructor

  holl-

  committed
  befc2b0

  Copy full SHA for befc2b0

• [geom] Fix 2D mesh building

  holl-

  committed
  7003dd8

  Copy full SHA for 7003dd8

• [field] Fix Field.sampled_at

  holl-

  committed
  154f70d

  Copy full SHA for 154f70d

• [geom] Mesh consistent neighbors dim name

  holl-

  committed
  a1f2c4d

  Copy full SHA for a1f2c4d

• [tests] Update test_sample_function

  holl-

  committed
  db908c2

  Copy full SHA for db908c2

Commits on Sep 18, 2024

• [geom] Simplify marching cubes

  Show description for a51efde
  

  Philipp Holl

  committed
  a51efde

  Copy full SHA for a51efde

• [geom] Implement surface_mesh(Box)

  

  Philipp Holl

  committed
  737d55d

  Copy full SHA for 737d55d

• [Φ] Add Point, length, minimum, maximum, clip to convenience imports

  

  Philipp Holl

  committed
  a5b5492

  Copy full SHA for a5b5492

• [geom] Add line_trace(), Mesh distance

  

  Philipp Holl

  committed
  121fc0f

  Copy full SHA for 121fc0f

• [vis] Fix max_subfigures condition

  

  Philipp Holl

  committed
  9415bab

  Copy full SHA for 9415bab

Commits on Sep 24, 2024

• [geom] Add BaseBox.largest,smallest

  

  Philipp Holl

  committed
  6525efb

  Copy full SHA for 6525efb

• [geom] Add enclosing_grid()

  

  Philipp Holl

  committed
  0b73299

  Copy full SHA for 0b73299

• sample_function now passes the Geometry if the first parameter is 'geo', 'geometry' or ends with '_geo'

  

  Philipp Holl

  committed
  c535409

  Copy full SHA for c535409

• [field] Alias Field << value, value >> Field

  

  Philipp Holl

  committed
  13852cb

  Copy full SHA for 13852cb

• [Φ] Add convenience imports primal,d2s

  

  Philipp Holl

  committed
  dad0a49

  Copy full SHA for dad0a49

Commits on Sep 25, 2024

• [vis] Plotly 3D scatter plots with colormap

  

  Philipp Holl

  committed
  1c47556

  Copy full SHA for 1c47556

Commits on Sep 26, 2024

• [vis] Fix negative density plots with Plotly

  

  Philipp Holl

  committed
  8588cf2

  Copy full SHA for 8588cf2

• [Φ] Add tensor creators, scatter, gather to convenience imports

  

  Philipp Holl

  committed
  7ff8c6f

  Copy full SHA for 7ff8c6f

• [geom] Add side argument to line_trace()

  

  Philipp Holl

  committed
  b66540e

  Copy full SHA for b66540e

• [geom] Support batched mesh creation using mesh(), fix variable attrs

  

  Philipp Holl

  committed
  b95e0fc

  Copy full SHA for b95e0fc

Commits on Sep 27, 2024

• [field] Fix laplace() for Field boundaries [requires phiml>=1.9]

  holl-

  committed
  3192075

  Copy full SHA for 3192075

• [Φ] Add convolve, close, equal to convenience imports

  holl-

  committed
  9754e13

  Copy full SHA for 9754e13

Commits on Sep 28, 2024

• [geom] Add missing docstrings

  holl-

  committed
  ceab362

  Copy full SHA for ceab362

• [demos] Remove demos

  Show description for bcb6b3e
  holl-

  committed
  bcb6b3e

  Copy full SHA for bcb6b3e

• [geom] Implement GeometryStack.sets

  holl-

  committed
  c5e82c9

  Copy full SHA for c5e82c9

• [vis] Fix error bars

  holl-

  committed
  d299f38

  Copy full SHA for d299f38

• [vis] Fix Matplotlib Heatmap3D

  holl-

  committed
  5da0ad7

  Copy full SHA for 5da0ad7

• [tests] Update test_plot_graph

  holl-

  committed
  c532575

  Copy full SHA for c532575

• [vis] Fix Plotly VectorCloud2D

  holl-

  committed
  c2264f4

  Copy full SHA for c2264f4

• Merge pull request #176 from tum-pbs/dev+3d

  Show description for 1259b84
  holl-

  authored
  1259b84

  Copy full SHA for 1259b84

Commits on Sep 29, 2024

• [ci] Run tests only on 3.10

  Show description for 20496ab
  holl-

  committed
  20496ab

  Copy full SHA for 20496ab

• [Φ] Bump version to 3.1.0

  holl-

  committed
  d448f41

  Copy full SHA for d448f41

• Merge branch 'master' into develop

  Show description for 4a71915
  holl-

  committed
  4a71915

  Copy full SHA for 4a71915