refactor: convert Doodson coefficients table to JSON #578
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python on pull request | |
| on: | |
| pull_request: | |
| schedule: | |
| # * is a special character in YAML so you have to quote this string | |
| - cron: '0 0 1 * *' | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: [3.11] | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python-version }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up mamba ${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: 'latest' | |
| environment-file: environment.yml | |
| init-shell: bash | |
| environment-name: pyTMD | |
| cache-environment: true | |
| post-cleanup: 'all' | |
| create-args: >- | |
| blas | |
| boto3 | |
| python=${{ matrix.python-version }} | |
| flake8 | |
| pytest | |
| pytest-cov | |
| cython | |
| geopandas | |
| jplephem | |
| octave | |
| oct2py | |
| pyarrow | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: "Check if repository secrets are accessible" | |
| id: secrets | |
| run: | | |
| if [ "${{ secrets.EARTHDATA_USERNAME }}" == '' ] ; then | |
| echo "accessible=false" >> $GITHUB_OUTPUT; | |
| echo "::debug::GitHub secrets unavailable for Actions"; | |
| else | |
| echo "accessible=true" >> $GITHUB_OUTPUT; | |
| echo "::debug::GitHub secrets available for Actions"; | |
| fi | |
| - name: Checkout Matlab TMD Toolbox | |
| if: steps.secrets.outputs.accessible == 'true' | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: EarthAndSpaceResearch/TMD_Matlab_Toolbox_v2.5 | |
| path: TMD_Matlab_Toolbox | |
| ref: master | |
| - name: Test with pytest | |
| if: steps.secrets.outputs.accessible == 'true' | |
| run: | | |
| pip install --no-deps . | |
| pytest --verbose --capture=no --cov=./ --cov-report=xml \ | |
| --username=${{ secrets.EARTHDATA_USERNAME }} \ | |
| --password=${{ secrets.EARTHDATA_PASSWORD }} \ | |
| --aws-access=${{ secrets.AWS_ACCESS_KEY_ID }} \ | |
| --aws-secret=${{ secrets.AWS_SECRET_ACCESS_KEY }} \ | |
| --aws-region=${{ secrets.AWS_REGION_NAME }} | |
| - name: Upload coverage to Codecov | |
| if: steps.secrets.outputs.accessible == 'true' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage.xml | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: true | |
| verbose: true | |
| - name: Archive code coverage results | |
| if: steps.secrets.outputs.accessible == 'true' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: code-coverage-report | |
| path: ./coverage.xml |