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Move atlases into a subfolder (PennLINC#1024)
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@tsalo
tsalo authored Jan 12, 2024
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24 changes: 17 additions & 7 deletions docs/outputs.rst
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Expand Up @@ -18,7 +18,7 @@ The *XCP-D* outputs are written out in BIDS format and consist of three main pa
`BEP012: Functional preprocessing derivatives <https://github.com/bids-standard/bids-specification/pull/519>`_,
`BEP017: BIDS connectivity matrix data schema <https://docs.google.com/document/d/1ugBdUF6dhElXdj3u9vw0iWjE6f_Bibsro3ah7sRV0GA/edit?usp=sharing>`_,
and
`BEPXXX: Atlas Specification <https://docs.google.com/document/d/1RxW4cARr3-EiBEcXjLpSIVidvnUSHE7yJCUY91i5TfM/edit?usp=sharing>`_
`BEP038: Atlas Specification <https://docs.google.com/document/d/1RxW4cARr3-EiBEcXjLpSIVidvnUSHE7yJCUY91i5TfM/edit?usp=sharing>`_
(currently unnumbered).

In cases where a derivative type is not covered by an existing BEP,
Expand Down Expand Up @@ -72,6 +72,22 @@ The 4S atlas is used in the same manner across three PennLINC BIDS Apps:
XCP-D, QSIPrep_, and ASLPrep_, to produce synchronized outputs across modalities.
For more information about the 4S atlas, please see https://github.com/PennLINC/AtlasPack.

Atlases are written out to the ``atlases`` subfolder, following BEP038.

.. code-block::
xcp_d/
atlases/
atlas-<label>/
atlas-<label>_dseg.json
atlas-<label>_dseg.tsv
# NIfTI
space-<label>_atlas-<label>_dseg.nii.gz
# CIFTI
space-<label>_atlas-<label>_dseg.dlabel.nii
******************
Anatomical Outputs
Expand Down Expand Up @@ -208,12 +224,6 @@ This includes the atlases used to extract the timeseries.
.. code-block::
xcp_d/
# NIfTI
space-<label>_atlas-<label>_dseg.nii.gz
# CIFTI
space-<label>_atlas-<label>_dseg.dlabel.nii
sub-<label>/[ses-<label>/]
func/
# NIfTI
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4 changes: 2 additions & 2 deletions xcp_d/data/xcp_d_bids_config.json
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Expand Up @@ -17,8 +17,8 @@
],
"default_path_patterns": [
"[desc-{desc}]_{suffix<qc>}{extension<.json>|.json}",
"[space-{space}_]atlas-{atlas}[_cohort-{cohort}][_res-{res}][_desc-{desc}]_{suffix<dseg>}{extension<.nii|.nii.gz|.tsv|.json>|.nii.gz}",
"[space-{space}_]atlas-{atlas}[_cohort-{cohort}][_den-{den}][_desc-{desc}]_{suffix<dseg>}{extension<.dlabel.nii|.tsv|.json>|.dlabel.nii}",
"atlases/atlas-{atlas}/[space-{space}_]atlas-{atlas}[_cohort-{cohort}][_res-{res}][_desc-{desc}]_{suffix<dseg>}{extension<.nii|.nii.gz|.tsv|.json>|.nii.gz}",
"atlases/atlas-{atlas}/[space-{space}_]atlas-{atlas}[_cohort-{cohort}][_den-{den}][_desc-{desc}]_{suffix<dseg>}{extension<.dlabel.nii|.tsv|.json>|.dlabel.nii}",
"sub-{subject}[/ses-{session}]/{datatype<anat>|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_atlas-{atlas}][_cohort-{cohort}][_res-{res}][_desc-{desc}]_{suffix<T1w|T2w|T1rho|T1map|T2map|T2starmap|FLAIR|FLASH|PDmap|PD|PDT2|dseg|inplaneT[12]|angio>}{extension<.nii|.nii.gz|.json>|.nii.gz}",
"sub-{subject}[/ses-{session}]/{datatype<anat>|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}]_from-{from}_to-{to}_mode-{mode<image|points>|image}_{suffix<xfm>|xfm}{extension<.txt|.h5>}",
"sub-{subject}[/ses-{session}]/{datatype<anat>|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_run-{run}][_space-{space}][_atlas-{atlas}][_cohort-{cohort}][_den-{den}]_hemi-{hemi<L|R>}[_desc-{desc}]_{suffix<wm|smoothwm|white|pial|midthickness|inflated|vinflated|sphere|flat>}{extension<.surf.gii|.json>|.surf.gii}",
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99 changes: 57 additions & 42 deletions xcp_d/tests/data/test_ds001419_cifti_outputs.txt
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xcp_d/atlas-4S1056Parcels_dseg.json
xcp_d/atlas-4S1056Parcels_dseg.tsv
xcp_d/atlas-4S156Parcels_dseg.json
xcp_d/atlas-4S156Parcels_dseg.tsv
xcp_d/atlas-4S256Parcels_dseg.json
xcp_d/atlas-4S256Parcels_dseg.tsv
xcp_d/atlas-4S356Parcels_dseg.json
xcp_d/atlas-4S356Parcels_dseg.tsv
xcp_d/atlas-4S456Parcels_dseg.json
xcp_d/atlas-4S456Parcels_dseg.tsv
xcp_d/atlas-4S556Parcels_dseg.json
xcp_d/atlas-4S556Parcels_dseg.tsv
xcp_d/atlas-4S656Parcels_dseg.json
xcp_d/atlas-4S656Parcels_dseg.tsv
xcp_d/atlas-4S756Parcels_dseg.json
xcp_d/atlas-4S756Parcels_dseg.tsv
xcp_d/atlas-4S856Parcels_dseg.json
xcp_d/atlas-4S856Parcels_dseg.tsv
xcp_d/atlas-4S956Parcels_dseg.json
xcp_d/atlas-4S956Parcels_dseg.tsv
xcp_d/atlas-Glasser_dseg.json
xcp_d/atlas-Glasser_dseg.tsv
xcp_d/atlas-Gordon_dseg.json
xcp_d/atlas-Gordon_dseg.tsv
xcp_d/atlas-HCP_dseg.json
xcp_d/atlas-HCP_dseg.tsv
xcp_d/atlas-Tian_dseg.json
xcp_d/atlas-Tian_dseg.tsv
xcp_d/atlases
xcp_d/atlases/atlas-4S1056Parcels
xcp_d/atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json
xcp_d/atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv
xcp_d/atlases/atlas-4S1056Parcels/space-fsLR_atlas-4S1056Parcels_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-4S156Parcels
xcp_d/atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json
xcp_d/atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv
xcp_d/atlases/atlas-4S156Parcels/space-fsLR_atlas-4S156Parcels_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-4S256Parcels
xcp_d/atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json
xcp_d/atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv
xcp_d/atlases/atlas-4S256Parcels/space-fsLR_atlas-4S256Parcels_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-4S356Parcels
xcp_d/atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json
xcp_d/atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv
xcp_d/atlases/atlas-4S356Parcels/space-fsLR_atlas-4S356Parcels_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-4S456Parcels
xcp_d/atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json
xcp_d/atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv
xcp_d/atlases/atlas-4S456Parcels/space-fsLR_atlas-4S456Parcels_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-4S556Parcels
xcp_d/atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json
xcp_d/atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv
xcp_d/atlases/atlas-4S556Parcels/space-fsLR_atlas-4S556Parcels_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-4S656Parcels
xcp_d/atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json
xcp_d/atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv
xcp_d/atlases/atlas-4S656Parcels/space-fsLR_atlas-4S656Parcels_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-4S756Parcels
xcp_d/atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json
xcp_d/atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv
xcp_d/atlases/atlas-4S756Parcels/space-fsLR_atlas-4S756Parcels_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-4S856Parcels
xcp_d/atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json
xcp_d/atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv
xcp_d/atlases/atlas-4S856Parcels/space-fsLR_atlas-4S856Parcels_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-4S956Parcels
xcp_d/atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json
xcp_d/atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv
xcp_d/atlases/atlas-4S956Parcels/space-fsLR_atlas-4S956Parcels_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-Glasser
xcp_d/atlases/atlas-Glasser/atlas-Glasser_dseg.json
xcp_d/atlases/atlas-Glasser/atlas-Glasser_dseg.tsv
xcp_d/atlases/atlas-Glasser/space-fsLR_atlas-Glasser_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-Gordon
xcp_d/atlases/atlas-Gordon/atlas-Gordon_dseg.json
xcp_d/atlases/atlas-Gordon/atlas-Gordon_dseg.tsv
xcp_d/atlases/atlas-Gordon/space-fsLR_atlas-Gordon_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-HCP
xcp_d/atlases/atlas-HCP/atlas-HCP_dseg.json
xcp_d/atlases/atlas-HCP/atlas-HCP_dseg.tsv
xcp_d/atlases/atlas-HCP/space-fsLR_atlas-HCP_den-91k_dseg.dlabel.nii
xcp_d/atlases/atlas-Tian
xcp_d/atlases/atlas-Tian/atlas-Tian_dseg.json
xcp_d/atlases/atlas-Tian/atlas-Tian_dseg.tsv
xcp_d/atlases/atlas-Tian/space-fsLR_atlas-Tian_den-91k_dseg.dlabel.nii
xcp_d/dataset_description.json
xcp_d/desc-linc_qc.json
xcp_d/logs
xcp_d/logs/CITATION.md
xcp_d/space-fsLR_atlas-4S1056Parcels_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-4S156Parcels_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-4S256Parcels_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-4S356Parcels_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-4S456Parcels_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-4S556Parcels_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-4S656Parcels_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-4S756Parcels_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-4S856Parcels_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-4S956Parcels_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-Glasser_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-Gordon_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-HCP_den-91k_dseg.dlabel.nii
xcp_d/space-fsLR_atlas-Tian_den-91k_dseg.dlabel.nii
xcp_d/sub-01
xcp_d/sub-01.html
xcp_d/sub-01/anat
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99 changes: 57 additions & 42 deletions xcp_d/tests/data/test_ds001419_nifti_outputs.txt
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xcp_d/atlas-4S1056Parcels_dseg.json
xcp_d/atlas-4S1056Parcels_dseg.tsv
xcp_d/atlas-4S156Parcels_dseg.json
xcp_d/atlas-4S156Parcels_dseg.tsv
xcp_d/atlas-4S256Parcels_dseg.json
xcp_d/atlas-4S256Parcels_dseg.tsv
xcp_d/atlas-4S356Parcels_dseg.json
xcp_d/atlas-4S356Parcels_dseg.tsv
xcp_d/atlas-4S456Parcels_dseg.json
xcp_d/atlas-4S456Parcels_dseg.tsv
xcp_d/atlas-4S556Parcels_dseg.json
xcp_d/atlas-4S556Parcels_dseg.tsv
xcp_d/atlas-4S656Parcels_dseg.json
xcp_d/atlas-4S656Parcels_dseg.tsv
xcp_d/atlas-4S756Parcels_dseg.json
xcp_d/atlas-4S756Parcels_dseg.tsv
xcp_d/atlas-4S856Parcels_dseg.json
xcp_d/atlas-4S856Parcels_dseg.tsv
xcp_d/atlas-4S956Parcels_dseg.json
xcp_d/atlas-4S956Parcels_dseg.tsv
xcp_d/atlas-Glasser_dseg.json
xcp_d/atlas-Glasser_dseg.tsv
xcp_d/atlas-Gordon_dseg.json
xcp_d/atlas-Gordon_dseg.tsv
xcp_d/atlas-HCP_dseg.json
xcp_d/atlas-HCP_dseg.tsv
xcp_d/atlas-Tian_dseg.json
xcp_d/atlas-Tian_dseg.tsv
xcp_d/atlases
xcp_d/atlases/atlas-4S1056Parcels
xcp_d/atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json
xcp_d/atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv
xcp_d/atlases/atlas-4S1056Parcels/space-MNI152NLin2009cAsym_atlas-4S1056Parcels_res-2_dseg.nii.gz
xcp_d/atlases/atlas-4S156Parcels
xcp_d/atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json
xcp_d/atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv
xcp_d/atlases/atlas-4S156Parcels/space-MNI152NLin2009cAsym_atlas-4S156Parcels_res-2_dseg.nii.gz
xcp_d/atlases/atlas-4S256Parcels
xcp_d/atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json
xcp_d/atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv
xcp_d/atlases/atlas-4S256Parcels/space-MNI152NLin2009cAsym_atlas-4S256Parcels_res-2_dseg.nii.gz
xcp_d/atlases/atlas-4S356Parcels
xcp_d/atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json
xcp_d/atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv
xcp_d/atlases/atlas-4S356Parcels/space-MNI152NLin2009cAsym_atlas-4S356Parcels_res-2_dseg.nii.gz
xcp_d/atlases/atlas-4S456Parcels
xcp_d/atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json
xcp_d/atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv
xcp_d/atlases/atlas-4S456Parcels/space-MNI152NLin2009cAsym_atlas-4S456Parcels_res-2_dseg.nii.gz
xcp_d/atlases/atlas-4S556Parcels
xcp_d/atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json
xcp_d/atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv
xcp_d/atlases/atlas-4S556Parcels/space-MNI152NLin2009cAsym_atlas-4S556Parcels_res-2_dseg.nii.gz
xcp_d/atlases/atlas-4S656Parcels
xcp_d/atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json
xcp_d/atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv
xcp_d/atlases/atlas-4S656Parcels/space-MNI152NLin2009cAsym_atlas-4S656Parcels_res-2_dseg.nii.gz
xcp_d/atlases/atlas-4S756Parcels
xcp_d/atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json
xcp_d/atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv
xcp_d/atlases/atlas-4S756Parcels/space-MNI152NLin2009cAsym_atlas-4S756Parcels_res-2_dseg.nii.gz
xcp_d/atlases/atlas-4S856Parcels
xcp_d/atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json
xcp_d/atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv
xcp_d/atlases/atlas-4S856Parcels/space-MNI152NLin2009cAsym_atlas-4S856Parcels_res-2_dseg.nii.gz
xcp_d/atlases/atlas-4S956Parcels
xcp_d/atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json
xcp_d/atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv
xcp_d/atlases/atlas-4S956Parcels/space-MNI152NLin2009cAsym_atlas-4S956Parcels_res-2_dseg.nii.gz
xcp_d/atlases/atlas-Glasser
xcp_d/atlases/atlas-Glasser/atlas-Glasser_dseg.json
xcp_d/atlases/atlas-Glasser/atlas-Glasser_dseg.tsv
xcp_d/atlases/atlas-Glasser/space-MNI152NLin2009cAsym_atlas-Glasser_res-2_dseg.nii.gz
xcp_d/atlases/atlas-Gordon
xcp_d/atlases/atlas-Gordon/atlas-Gordon_dseg.json
xcp_d/atlases/atlas-Gordon/atlas-Gordon_dseg.tsv
xcp_d/atlases/atlas-Gordon/space-MNI152NLin2009cAsym_atlas-Gordon_res-2_dseg.nii.gz
xcp_d/atlases/atlas-HCP
xcp_d/atlases/atlas-HCP/atlas-HCP_dseg.json
xcp_d/atlases/atlas-HCP/atlas-HCP_dseg.tsv
xcp_d/atlases/atlas-HCP/space-MNI152NLin2009cAsym_atlas-HCP_res-2_dseg.nii.gz
xcp_d/atlases/atlas-Tian
xcp_d/atlases/atlas-Tian/atlas-Tian_dseg.json
xcp_d/atlases/atlas-Tian/atlas-Tian_dseg.tsv
xcp_d/atlases/atlas-Tian/space-MNI152NLin2009cAsym_atlas-Tian_res-2_dseg.nii.gz
xcp_d/dataset_description.json
xcp_d/desc-linc_qc.json
xcp_d/logs
xcp_d/logs/CITATION.md
xcp_d/space-MNI152NLin2009cAsym_atlas-4S1056Parcels_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S156Parcels_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S256Parcels_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S356Parcels_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S456Parcels_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S556Parcels_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S656Parcels_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S756Parcels_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S856Parcels_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S956Parcels_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-Glasser_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-Gordon_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-HCP_res-2_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-Tian_res-2_dseg.nii.gz
xcp_d/sub-01
xcp_d/sub-01.html
xcp_d/sub-01/anat
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99 changes: 57 additions & 42 deletions xcp_d/tests/data/test_fmriprep_without_freesurfer_outputs.txt
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xcp_d/atlas-4S1056Parcels_dseg.json
xcp_d/atlas-4S1056Parcels_dseg.tsv
xcp_d/atlas-4S156Parcels_dseg.json
xcp_d/atlas-4S156Parcels_dseg.tsv
xcp_d/atlas-4S256Parcels_dseg.json
xcp_d/atlas-4S256Parcels_dseg.tsv
xcp_d/atlas-4S356Parcels_dseg.json
xcp_d/atlas-4S356Parcels_dseg.tsv
xcp_d/atlas-4S456Parcels_dseg.json
xcp_d/atlas-4S456Parcels_dseg.tsv
xcp_d/atlas-4S556Parcels_dseg.json
xcp_d/atlas-4S556Parcels_dseg.tsv
xcp_d/atlas-4S656Parcels_dseg.json
xcp_d/atlas-4S656Parcels_dseg.tsv
xcp_d/atlas-4S756Parcels_dseg.json
xcp_d/atlas-4S756Parcels_dseg.tsv
xcp_d/atlas-4S856Parcels_dseg.json
xcp_d/atlas-4S856Parcels_dseg.tsv
xcp_d/atlas-4S956Parcels_dseg.json
xcp_d/atlas-4S956Parcels_dseg.tsv
xcp_d/atlas-Glasser_dseg.json
xcp_d/atlas-Glasser_dseg.tsv
xcp_d/atlas-Gordon_dseg.json
xcp_d/atlas-Gordon_dseg.tsv
xcp_d/atlas-HCP_dseg.json
xcp_d/atlas-HCP_dseg.tsv
xcp_d/atlas-Tian_dseg.json
xcp_d/atlas-Tian_dseg.tsv
xcp_d/atlases
xcp_d/atlases/atlas-4S1056Parcels
xcp_d/atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json
xcp_d/atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv
xcp_d/atlases/atlas-4S1056Parcels/space-MNI152NLin2009cAsym_atlas-4S1056Parcels_dseg.nii.gz
xcp_d/atlases/atlas-4S156Parcels
xcp_d/atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json
xcp_d/atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv
xcp_d/atlases/atlas-4S156Parcels/space-MNI152NLin2009cAsym_atlas-4S156Parcels_dseg.nii.gz
xcp_d/atlases/atlas-4S256Parcels
xcp_d/atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json
xcp_d/atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv
xcp_d/atlases/atlas-4S256Parcels/space-MNI152NLin2009cAsym_atlas-4S256Parcels_dseg.nii.gz
xcp_d/atlases/atlas-4S356Parcels
xcp_d/atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json
xcp_d/atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv
xcp_d/atlases/atlas-4S356Parcels/space-MNI152NLin2009cAsym_atlas-4S356Parcels_dseg.nii.gz
xcp_d/atlases/atlas-4S456Parcels
xcp_d/atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json
xcp_d/atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv
xcp_d/atlases/atlas-4S456Parcels/space-MNI152NLin2009cAsym_atlas-4S456Parcels_dseg.nii.gz
xcp_d/atlases/atlas-4S556Parcels
xcp_d/atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json
xcp_d/atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv
xcp_d/atlases/atlas-4S556Parcels/space-MNI152NLin2009cAsym_atlas-4S556Parcels_dseg.nii.gz
xcp_d/atlases/atlas-4S656Parcels
xcp_d/atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json
xcp_d/atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv
xcp_d/atlases/atlas-4S656Parcels/space-MNI152NLin2009cAsym_atlas-4S656Parcels_dseg.nii.gz
xcp_d/atlases/atlas-4S756Parcels
xcp_d/atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json
xcp_d/atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv
xcp_d/atlases/atlas-4S756Parcels/space-MNI152NLin2009cAsym_atlas-4S756Parcels_dseg.nii.gz
xcp_d/atlases/atlas-4S856Parcels
xcp_d/atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json
xcp_d/atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv
xcp_d/atlases/atlas-4S856Parcels/space-MNI152NLin2009cAsym_atlas-4S856Parcels_dseg.nii.gz
xcp_d/atlases/atlas-4S956Parcels
xcp_d/atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json
xcp_d/atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv
xcp_d/atlases/atlas-4S956Parcels/space-MNI152NLin2009cAsym_atlas-4S956Parcels_dseg.nii.gz
xcp_d/atlases/atlas-Glasser
xcp_d/atlases/atlas-Glasser/atlas-Glasser_dseg.json
xcp_d/atlases/atlas-Glasser/atlas-Glasser_dseg.tsv
xcp_d/atlases/atlas-Glasser/space-MNI152NLin2009cAsym_atlas-Glasser_dseg.nii.gz
xcp_d/atlases/atlas-Gordon
xcp_d/atlases/atlas-Gordon/atlas-Gordon_dseg.json
xcp_d/atlases/atlas-Gordon/atlas-Gordon_dseg.tsv
xcp_d/atlases/atlas-Gordon/space-MNI152NLin2009cAsym_atlas-Gordon_dseg.nii.gz
xcp_d/atlases/atlas-HCP
xcp_d/atlases/atlas-HCP/atlas-HCP_dseg.json
xcp_d/atlases/atlas-HCP/atlas-HCP_dseg.tsv
xcp_d/atlases/atlas-HCP/space-MNI152NLin2009cAsym_atlas-HCP_dseg.nii.gz
xcp_d/atlases/atlas-Tian
xcp_d/atlases/atlas-Tian/atlas-Tian_dseg.json
xcp_d/atlases/atlas-Tian/atlas-Tian_dseg.tsv
xcp_d/atlases/atlas-Tian/space-MNI152NLin2009cAsym_atlas-Tian_dseg.nii.gz
xcp_d/dataset_description.json
xcp_d/desc-linc_qc.json
xcp_d/logs
xcp_d/logs/CITATION.bib
xcp_d/logs/CITATION.html
xcp_d/logs/CITATION.md
xcp_d/logs/CITATION.tex
xcp_d/space-MNI152NLin2009cAsym_atlas-4S1056Parcels_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S156Parcels_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S256Parcels_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S356Parcels_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S456Parcels_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S556Parcels_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S656Parcels_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S756Parcels_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S856Parcels_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-4S956Parcels_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-Glasser_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-Gordon_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-HCP_dseg.nii.gz
xcp_d/space-MNI152NLin2009cAsym_atlas-Tian_dseg.nii.gz
xcp_d/sub-01
xcp_d/sub-01.html
xcp_d/sub-01/anat
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