Run_Prospector_CL.sh

# This file is part of nanopore-prospector.
#
# nanopore-prospector is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# nanopore-prospector is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with nanopore-prospector. If not, see <http://www.gnu.org/licenses/>.

# Version 1.0

# See the file README.MD for how to set up your anaconda environment.

source /home/ben/minionvenv/bin/activate
python Nanopore_Prospector_Main.py \
 --reads="/home/ben/Github/nanopore_prospector/DRA_Analysis/Batch1Reads/1ddemultiplexed/BC04" \
 --outputdir="/home/ben/Github/nanopore_prospector/DRA_Analysis/Batch1Reads/1ddemultiplexed/BC04_analysis"