Aligns short reads using dynamic seed size with strobemers
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Dec 25, 2024 - C++
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short-read-mapping
Here are 6 public repositories matching this topic...
BWA-MEME: Faster BWA-MEM2 using learned-index
machine-learning bioinformatics genomics ngs bwa-mem alignment-algorithm learned-index bwa-mem2 short-read-mapping bwa-meme
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Jul 1, 2024 - C++
Implementation of BucketMap, a novel cache-efficient, bit-parallel and alignment-free short read mapping algorithm.
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Apr 23, 2024 - C++
Burrow-Wheeler Aligner for short-read alignment (optimized for aeDNA)
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Nov 15, 2024 - C
This is a repository for a seminar on Bowtie2 and its use of the Burrows-Wheeler Transform and FM-index in short-read sequence mapping.
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Oct 30, 2023 - Python
Whisper 2: indel-sensitive short read mapping. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711021000376
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Apr 14, 2021 - C++
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