Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")
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Updated
Aug 16, 2024 - Python
Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")
A Python package for gene network analysis
A Python toolkit for setting up benchmarking dataset using biomedical networks
Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery"
NXOntology data: making ontologies accessible as simple JSON files
NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks
A Python package for network analysis through diffusion label propagation algorithms
A Python package for analyzing harmonized biological networks through diffusion algorithms
Scripts and data from "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms"
Simulating and analyzing dynamical network models
Simulation of interactions miRNA:Competing Targets
TBN_learning is a MATLAB implemented hybrid algorithm for learning the structure of transcriptional Bayesian networks on a genome-wide scale.
Code for my Master project
This repository contains companion codes, developed for use with the CRC Press Book "An Introduction to Systems Biology" by Karthik Raman
A knowledge graph of the wastewater treatment microbiome and its biological context
A web interface for ontology-based protein network visualization.
Semantic Capture of Relationships In Biological Literature (scribl)
Find deregulated biomolecular networks
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