A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
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Dec 5, 2023
#
methylation-microarrays
Here are 14 public repositories matching this topic...
This package provides Illumina Mouse Methylation Array Manifest (12.v1, Genome Build mm10) compatible with minfi.
bioinformatics mouse methylation methylation-microarrays illumina-beadarrays illumina-bead-chip methylation-analysis methylation-annotation
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Jul 11, 2024 - R
Gaussian mixture modelling - Unsupervised learning
unsupervised clustering uncertainty methylation gaussian expectation-maximization parameter-estimation unsupervised-learning probes em mixture-model propagation mixture-modeling methylation-microarrays principal-component-analysis loci affinity unsupervised-machine-learning affinity-propagation cpgs
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Apr 5, 2017 - R
Methylation Array Cross-Reactive Probes
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Oct 19, 2018 - R
Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.
genome r-package dna-methylation methylation-microarrays bioinformatics-tool exposome multiomics methylation-analysis
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Dec 13, 2024 - R
📦 🔬 R/methyvim: Targeted, Robust, and Model-free Differential Methylation Analysis
machine-learning bioinformatics r statistics variable-importance computational-biology biostatistics bioconductor dna-methylation targeted-learning bioconductor-packages methylation-microarrays causal-inference bioconductor-package
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Apr 28, 2020 - TeX
Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files
python methylation epigenetics illumina methylation-microarrays cnv umap minfi tumor-classification conumee methylation-extractor methylation-analysis methylation-plot
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Jan 3, 2025 - Python
Epicopy R package for CNV identification from methylation microarrays.
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Sep 19, 2017 - R
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Sep 26, 2017 - R
📦 Bioconductor data package associated with the methyvim R package
bioinformatics r dataset biostatistics bioconductor bioconductor-packages methylation-microarrays methyl-seq
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Nov 2, 2017 - R
Detection of rare aberrantly methylated regions in array and NGS data — an R/Bioc package
next-generation-sequencing bioconductor dna-methylation methylation-microarrays aberrant-methylation epimutation
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Jan 5, 2025 - R
generates reference matrix of average beta methylation values
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Jan 30, 2018 - Python
An annotation for mapping cpgs on the EPIC DNA methylation microarray platform to genomic features.
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Jan 8, 2020
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