kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
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Dec 13, 2024 - Rust
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kmer-composition
Here are 5 public repositories matching this topic...
K-mer counting algorithms and count-data utilities for the BioJulia framework
kmer kmer-frequency-count kmer-distribution kmer-counting biojulia kmer-composition kmers kmer-spectra
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Apr 23, 2023 - Julia
Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.
java graph graph-algorithms directed-graph error-correcting genome-sequencing cycles genome-assembly reads eulerian-circuit hamiltonian-cycles debruijn-graph overlap-graph kmer-composition phi-x174 tip-removal bubble-detection
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May 27, 2018 - Java
Test if a kmer is or is not in a set of sequences
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Apr 19, 2020 - C++
A simple tool to generate hierarchical clustering trees from nucleotide sequences. Supports a number of distance metrics and clustering algorithms. Includes a large testset of SARSCOV2 genomes.
distance phylogenetic-trees genome-analysis kmer-composition bioinfo hierarchical-clustering-trees sarscov2
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May 7, 2021 - Python
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