This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

Official AFNI source and documentation

fMRI Imaging Analysis

Estimation, analysis and decomposition of brainwave spatiotemporal dynamics

Using computational tools to explore the networks underlying cognitive neuroscience

catchaMouse16: CAnonical Time-series CHaracteristics for Mouse fMRI

Fully automatic technique for fetal brain segmentation using deep convolutional neural network

Neuroimaging analysis in Python

A toolbox for NIfTI and Analyze medical image visualization, editing, and 3D rendering

Semi-blind deconvolution for fMRI (BOLD signal)

Kurs zu fMRT-Datenanalyse mit Python (Sommersemester 2019). Eigenständige Erstellung von MRT-Viewern und DIY-Analyse von fMRT-Zeitverläufen und Aktivierungskarten mit Python.

Materials for the "fMRI analysis" workshop at the Cognitive Neuroscience Skills Training In Cambridge-2023 (COGNESTIC-2023).

Some pipelines implemented with nipype.

Repository for neurocaps, a Python package to perform Co-Activation Patterns (CAPs) analyses.

fMRI and omics viewer for quality control and data exploration

Functional connectivity analysis with the Desikan-Killiany Atlas

This is a repository of MATLAB codes accompanying the paper "Non-linear functional co-activations: directed, dynamic, and delayed"

Knights et al. (2021). Does HAROLD in motor cortex reflect compensation? Journal of Neuroscience.

Detergent for Multivariate Analysis Pipelines of Neuroimaging data in Python

A tool to facilitate efficient exploration of fMRI/omics data