LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

Experimental design framework for scRNAseq population studies (eQTL and DE)

Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.

Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation

CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq

Script and pipeline for BRAINcode project

Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression

Older repo for MRLocus. See new website for software usage guide:

Software to perform multi-ancestry SNP fine-mapping on molecular data

R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"

NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model

Tejaas - a tool for discovering trans-eQTLs

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

Analysis of regulatory impacts of GWAS SNPs associated with psychiatric disorders and cognitive functioning.

Computationally efficient and statistically powerful software for detecting context-specific eQTL effects in multi-context genomic studies.

Analysis of regulatory impacts of autism-associated SNPs on biological pathways in the fetal and adult cortex.

A workflow based on QTLtools to run cis- and trans-QTL analyses.

A snakemake pipeline for QTL mapping. Based on the GTEX pipeline

Hierarchical probabilistic models for multiple gene/variant associations based on NGS data

Some workflows I wrote for my phd projects