Repository for the GA4GH phenopacket schema
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Sep 19, 2024 - Java
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ehr-phenotyping
Here are 16 public repositories matching this topic...
[ML4H 2022] This is the code for our paper `Counterfactual and Factual Reasoning over Hypergraphs for Interpretable Clinical Predictions on EHR'.
health ehr causal-inference factual ehr-phenotyping counterfactual graph-neural-networks hypergraph-learning ml4h
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Feb 6, 2024 - Python
using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
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Jan 13, 2023 - Python
A software toolkit for the interconversion of standard data models for phenotypic data
csv convert biomedical-informatics ehr beacon health-data cdisc redcap bff omop pxf ehr-phenotyping phenopacket ehr-data omop-cdm cdisc-odm beacon-v2 phenopackets-v2 cnag convert-pheno
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Dec 20, 2024 - Perl
Code accompanying our ACM CHIL paper: "TASTE: Temporal and Static Tensor Factorization for Phenotyping Electronic Health Records"
healthcare phenotyping tensor predictive-modeling unsupervised-learning electronic-health-record ehr-phenotyping
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Apr 22, 2020 - MATLAB
The OMOP Common Data Model(v6) implemented in Django (v3)
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Jan 26, 2021 - Python
How to: create SNOMED CT codelists
python emr tutorial r howto stata how-to ehr electronic-health-records codeset snomed-ct ehr-phenotyping electronic-healthcare-data codelists
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Nov 13, 2024 - Stata
How to: find acute exacerbation of COPD events in UK primary care electronic healthcare records
emr tutorial howto stata how-to ehr electronic-health-records codeset snomed-ct ehr-phenotyping electronic-healthcare-data codelists
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Jul 20, 2023 - Stata
How to: create drug codelists for recorded prescriptions
emr tutorial r howto stata how-to publication ehr electronic-health-records codeset snomed-ct ehr-phenotyping electronic-healthcare-data codelists pharmacoepidemiology electronic-healthcare-records value-sets ehr-ontology
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Sep 30, 2024 - Stata
RETIRED - Clinical phenotyping and ETL system
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Apr 9, 2018 - Java
This project shows a method with a topic modeling approach: non-negative matrix factorization (NMF), used in EHR for subphenotyping and identifying the relationship between phenotypes and genetic variants
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Jun 7, 2019 - Jupyter Notebook
Cast different EHR (electronic health record) layers to a shared latent space to identify patient subtypes
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Sep 25, 2023 - Jupyter Notebook
Introduction to PERMIT project resources
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Apr 14, 2018
Quality and Outcomes Framework (QOF) notes
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Oct 16, 2024 - R
Lecture slides on Electronic Health Record Data Quality
data-quality ehr-phenotyping clinical-data-warehouse ehr-data ehr-phenotypes data-qc clinical-research-data-warehouse foamed
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Dec 18, 2024 - Makefile
Repositorio del proyecto "Detección automática de consultas para apoyar la atención de la salud sexual y reproductiva de personas con discapacidad"
ehr healthcare-application salud health-informatics disability ehr-phenotyping discapacidad ehr-phenotypes
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Dec 18, 2024 - Jupyter Notebook
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