Nifti and compressed nifti, orientation support, load and save #52
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…on support for exporting, nifti images are now saved in the original orientation to the source image.
…if it already exists.
…racted and compressed to be kept
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Side note: Couldn't find a dev branch so chosen master as destination.
saving images as nifti resulted in orientation information to not be saved.
This meant that exported nifti images were not compatible with the original source image from which it was derived. Now added support so that orientation information from PTKDicomImage object is saved to the nifti header in NIFTI's RAS format. Also removed the flip on dimensions 1 and 2 as NIFTI stores data in opposite convention to DICOM.
Feature added to be to save and load compressed NIFTI files
Convenient to be able to directly work with compressed NIFTI files on disk rather than raw nifti as they can be several times smaller.