Add Citation for TBP Whitepaper #428
Workflow file for this run
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| name: Tools | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.run_id }} | |
| cancel-in-progress: true | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| test_tools: | |
| name: test-tools | |
| runs-on: ubuntu-latest | |
| if: ${{ github.repository_owner == 'thousandbrainsproject' }} | |
| steps: | |
| - name: Checkout tbp.monty | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| lfs: true | |
| path: tbp.monty | |
| - name: Filter by path for a pull request | |
| if: ${{ github.event_name == 'pull_request' }} | |
| id: filter_by_path_pr | |
| working-directory: tbp.monty | |
| run: | | |
| git diff --name-only origin/${{ github.base_ref }} > changed_files.txt | |
| while IFS= read -r changed_file | |
| do | |
| echo $changed_file | |
| if [[ $changed_file == tools/* ]] || | |
| [[ $changed_file == .github/workflows/tools.yml ]]; then | |
| echo "run_test_tools=true" >> $GITHUB_OUTPUT | |
| exit 0 | |
| fi | |
| done < changed_files.txt | |
| - name: Filter by path for a push | |
| if: ${{ github.event_name == 'push' }} | |
| id: filter_by_path_push | |
| working-directory: tbp.monty | |
| run: | | |
| git diff --name-only ${{ github.sha }}^1 > changed_files.txt | |
| while IFS= read -r changed_file | |
| do | |
| echo $changed_file | |
| if [[ $changed_file == tools/* ]] || | |
| [[ $changed_file == .github/workflows/tools.yml ]]; then | |
| echo "run_test_tools=true" >> $GITHUB_OUTPUT | |
| exit 0 | |
| fi | |
| done < changed_files.txt | |
| - name: Should run | |
| id: should_run | |
| if: ${{ steps.filter_by_path_pr.outputs.run_test_tools == 'true' || steps.filter_by_path_push.outputs.run_test_tools == 'true'}} | |
| run: echo "run_test_tools=true" >> $GITHUB_OUTPUT | |
| - name: Set up ~/tbp | |
| if: ${{ steps.should_run.outputs.run_test_tools == 'true' }} | |
| run: | | |
| mkdir -p ~/tbp | |
| ln -s $GITHUB_WORKSPACE/tbp.monty ~/tbp/tbp.monty | |
| - name: Set up Python 3.8 | |
| if: ${{ steps.should_run.outputs.run_test_tools == 'true' }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.8" | |
| - name: Install miniconda | |
| if: ${{ steps.should_run.outputs.run_test_tools == 'true' }} | |
| run: | | |
| if [ ! -d ~/miniconda ] | |
| then | |
| wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh | |
| bash ~/miniconda.sh -b -p ~/miniconda | |
| rm ~/miniconda.sh | |
| fi | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| conda --version | |
| - name: Create conda environment | |
| if: ${{ steps.should_run.outputs.run_test_tools == 'true' }} | |
| working-directory: tbp.monty | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| (conda env list | grep tbp.monty) && conda remove --name tbp.monty --all --yes || true | |
| conda env create | |
| source activate tbp.monty | |
| pip install -e .[dev,github_readme_sync_tool,print_version_tool,generate_api_docs_tool] | |
| pip list | |
| conda list | |
| - name: Check style | |
| if: ${{ steps.should_run.outputs.run_test_tools == 'true' }} | |
| working-directory: tbp.monty | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| source activate tbp.monty | |
| ruff check tools | |
| - name: Check types | |
| if: ${{ steps.should_run.outputs.run_test_tools == 'true' }} | |
| working-directory: tbp.monty | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| source activate tbp.monty | |
| mypy --warn-unused-ignores tools | |
| - name: Check dependencies | |
| if: ${{ steps.should_run.outputs.run_test_tools == 'true' }} | |
| working-directory: tbp.monty | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| source activate tbp.monty | |
| deptry src tools | |
| - name: Run tests | |
| if: ${{ steps.should_run.outputs.run_test_tools == 'true' }} | |
| working-directory: tbp.monty | |
| run: | | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| source activate tbp.monty | |
| pytest tools |