Build environments

Latest pertpy for conditions nb #478

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Triggered via pull request April 7, 2024 07:20

Zethson

opened #266

feature/new_jupyter_book

Status Failure

Total duration 1m 10s

Artifacts –

build_environments.yml

on: pull_request

Matrix: Build-environments

Annotations

28 errors, 17 warnings, and 13 notices

Build-environments (jupyter-book/conditions/perturbation_modeling.yml)

Failed to execute ["/home/runner/micromamba-bin/micromamba create -n currentenv -y --log-level warning -f /home/runner/work/single-cell-best-practices/single-cell-best-practices/jupyter-book/conditions/perturbation_modeling.yml"]: Error: The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1

Build-environments (jupyter-book/spatial/spatial.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/spatial/spatial.yml)

The operation was canceled.

Build-environments (jupyter-book/multimodal_integration/advanced_integration.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/multimodal_integration/advanced_integration.yml)

The operation was canceled.

Build-environments (jupyter-book/mechanisms/cell_cell_communication.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/mechanisms/cell_cell_communication.yml)

The operation was canceled.

Build-environments (jupyter-book/cellular_structure/annotation.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/cellular_structure/annotation.yml)

The operation was canceled.

Build-environments (jupyter-book/conditions/differential_gene_expression.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/conditions/differential_gene_expression.yml)

The operation was canceled.

Build-environments (jupyter-book/cellular_structure/integration.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/cellular_structure/integration.yml)

The operation was canceled.

Build-environments (jupyter-book/trajectories/lineage_tracing.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/trajectories/lineage_tracing.yml)

The operation was canceled.

Build-environments (jupyter-book/preprocessing_visualization/preprocessing.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/conditions/gsea_pathway.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/preprocessing_visualization/preprocessing.yml)

The operation was canceled.

Build-environments (jupyter-book/conditions/gsea_pathway.yml)

The operation was canceled.

Build-environments (jupyter-book/multimodal_integration/paired_integration.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/multimodal_integration/paired_integration.yml)

The operation was canceled.

Build-environments (jupyter-book/conditions/compositional.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/conditions/compositional.yml)

The operation was canceled.

Build-environments (jupyter-book/cellular_structure/clustering.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/cellular_structure/clustering.yml)

The operation was canceled.

Build-environments (jupyter-book/introduction/analysis_tools.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/trajectories/pseudotemporal.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/surface_protein/surface_protein.yml)

The job was canceled because "jupyter-book_conditions_p" failed.

Build-environments (jupyter-book/conditions/perturbation_modeling.yml)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mamba-org/provision-with-micromamba@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Build-environments (jupyter-book/conditions/perturbation_modeling.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/spatial/spatial.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/multimodal_integration/advanced_integration.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/mechanisms/cell_cell_communication.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/cellular_structure/annotation.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/conditions/differential_gene_expression.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/cellular_structure/integration.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/trajectories/lineage_tracing.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/preprocessing_visualization/preprocessing.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/conditions/gsea_pathway.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/multimodal_integration/paired_integration.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/conditions/compositional.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/cellular_structure/clustering.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/introduction/analysis_tools.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/trajectories/pseudotemporal.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/surface_protein/surface_protein.yml)

This action is deprecated and no longer maintained. Please use mamba-org/setup-micromamba instead. See `https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba` for a migration guide.

Build-environments (jupyter-book/conditions/perturbation_modeling.yml)

Conda environment setup failed. Cache will not be saved.

Build-environments (jupyter-book/spatial/spatial.yml)

Conda environment setup failed. Cache will not be saved.

Build-environments (jupyter-book/multimodal_integration/advanced_integration.yml)

Conda environment setup failed. Cache will not be saved.

Build-environments (jupyter-book/mechanisms/cell_cell_communication.yml)

Conda environment setup failed. Cache will not be saved.

Build-environments (jupyter-book/cellular_structure/annotation.yml)

Conda environment setup failed. Cache will not be saved.

Build-environments (jupyter-book/conditions/differential_gene_expression.yml)

Conda environment setup failed. Cache will not be saved.

Build-environments (jupyter-book/cellular_structure/integration.yml)

Conda environment setup failed. Cache will not be saved.

Build-environments (jupyter-book/trajectories/lineage_tracing.yml)

Conda environment setup failed. Cache will not be saved.

Build-environments (jupyter-book/preprocessing_visualization/preprocessing.yml)

Conda environment setup failed. Cache will not be saved.

Build-environments (jupyter-book/conditions/gsea_pathway.yml)

Conda environment setup failed. Cache will not be saved.

Build-environments (jupyter-book/multimodal_integration/paired_integration.yml)

Conda environment setup failed. Cache will not be saved.

Build-environments (jupyter-book/conditions/compositional.yml)

Conda environment setup failed. Cache will not be saved.

Build-environments (jupyter-book/cellular_structure/clustering.yml)

Conda environment setup failed. Cache will not be saved.