Update scrna_seq.md (#301) #1141
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| name: Build book | |
| on: [push, pull_request] | |
| jobs: | |
| build-book: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Setup environment | |
| run: | | |
| pip install uv | |
| uv pip install --system jupyter-book jupytext beautifulsoup4 | |
| - name: Cache jupyter-cache folder | |
| uses: actions/cache@v2 | |
| env: | |
| cache-name: jupyter-cache | |
| with: | |
| path: jupyter-book/_build/.jupyter_cache | |
| key: v1-${{ github.ref }}-${{ hashFiles('notebook_scripts/**/*.py') }} | |
| restore-keys: | | |
| v1-${{ github.ref }}-${{ hashFiles('notebook_scripts/**/*.py') }} | |
| v1-${{ github.ref }} | |
| v1-refs/heads/master | |
| - name: Build the JupyterBook | |
| run: make | |
| pdfhtml: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade uv | |
| uv pip install --system jupyter-book jupytext beautifulsoup4 | |
| - name: Install Headless Chrome dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -yq $(cat .github/workflows/pyppeteer_requirements.txt) | |
| - name: Install Chromium | |
| run: uv pip install --system pyppeteer | |
| - name: Build PDF from HTML (Docs) | |
| run: make pdf | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: PDF_HTML | |
| path: jupyter-book/_build/pdf/book.pdf |