Repository for scripts and notebooks used for scPoli paper. All the datasets used in the work are public. Data for the PBMC atlas can be downloaded here.
This code is not maintained and the core code has been moved and integrate in the scArches package. A tutorial for scPoli usage is available here.
ScVI & ScANVI:
pip install scvi-toolsScib:
pip install git+https://github.com/theislab/scib- Mars
- Since the model is not packaged, we had to clone the repository in this one.
- Seurat
- Install R (4.1.0) Install Seurat (4.0.3) Install SeuratDisk (0.0.0.9019)
- scPoli
- Please use the scPoli_legacy repository for reproducibility. That code is not maintained. For any other use refer to scArches.
