Code

Cohort Tracker#658

Code

Merged

eroell merged 50 commits intotheislab:maintheislab/ehrapy:mainfrom eroell:pop-logeroell/ehrapy:pop-logCopy head branch name to clipboardMar 13, 2024

+865-3

Commits

Commits on Feb 12, 2024

• nb with stuff that at least does not just fail

  eroell

  committed
  decd34a

Commits on Feb 13, 2024

• population logging and tracking first support

  eroell

  committed
  6407623

Commits on Feb 14, 2024

• refined and first-line debugged population tracking

  eroell

  committed
  cd7e113

• population to cohort

  eroell

  committed
  5ee6b5d

• cohort logging with tests

  eroell

  committed
  2e28f2b

Commits on Feb 15, 2024

• toy notebook cleaned

  eroell

  committed
  3673d28

Commits on Feb 29, 2024

• small comments included

  eroell

  committed
  9687e4d

• documentation working somewhat

  eroell

  committed
  c6f5955

Commits on Mar 1, 2024

• remove class in tests

  eroell

  committed
  dcc3841

• move read_csv to fixture

  eroell

  committed
  b844096

Commits on Mar 5, 2024

• remove tracking dict, use tableones for tracking instead

  eroell

  committed
  75451bd

• remove DataFrame as accepted input

  eroell

  committed
  c42d847

• legend label order matching bar order

  eroell

  committed
  232c2b1

• prepare type detection for alignment, added test

  eroell

  committed
  4090f6f

Commits on Mar 6, 2024

• add ax and remove unused args, return not solved yet

  eroell

  committed
  4606155

• tests for plots, move to pyplot for flowchart

  eroell

  committed
  2728ba5

Commits on Mar 9, 2024

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for c8ff205
  

  eroell

  and

  Zethson

  authored
  c8ff205

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for 3c7cdc9
  

  eroell

  and

  Zethson

  authored
  3c7cdc9

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for 088983c
  

  eroell

  and

  Zethson

  authored
  088983c

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for e9dedbb
  

  eroell

  and

  Zethson

  authored
  e9dedbb

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for 711c710
  

  eroell

  and

  Zethson

  authored
  711c710

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for 7f25d66
  

  eroell

  and

  Zethson

  authored
  7f25d66

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for 331c095
  

  eroell

  and

  Zethson

  authored
  331c095

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for ee0b68f
  

  eroell

  and

  Zethson

  authored
  ee0b68f

• remove reset, add updated notebook for quick check

  eroell

  committed
  7472eaa

• typehints and review comments

  eroell

  committed
  89e5d5b

• remove comment in test

  eroell

  committed
  ced853e

• tableone to requirements?

  eroell

  committed
  0d44608

Commits on Mar 12, 2024

• allow typehint union

  eroell

  committed
  482d0cb

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for da4f922
  pre-commit-ci[bot]

  committed
  da4f922

• Fix scanpy pre-release compat

  Show description for 83c0cca
  Zethson

  committed
  83c0cca

• Remove anndata warning ignore

  Show description for 6327638
  Zethson

  committed
  6327638

• future import fixed in test conf

  eroell

  committed
  3e58315

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 92f9112
  pre-commit-ci[bot]

  committed
  92f9112

• track_t1 -> tracked_tables

  eroell

  committed
  057dd8f

Commits on Mar 13, 2024

• updates with better names, label-dicts, better colors, more tests

  eroell

  committed
  5589a22

• Merge branch 'pop-log' of github.com:eroell/ehrapy into pop-log

  eroell

  committed
  a7646a0

• remove grid lines, add notebook for testimages generation

  eroell

  committed
  e79c031

• prettier docstring demo

  eroell

  committed
  d24f677

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for a4c021b
  

  eroell

  and

  Zethson

  authored
  a4c021b

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for b75cdbb
  

  eroell

  and

  Zethson

  authored
  b75cdbb

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for d5cfa23
  

  eroell

  and

  Zethson

  authored
  d5cfa23

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for 5261de3
  

  eroell

  and

  Zethson

  authored
  5261de3

• Update ehrapy/tools/cohort_tracking/_cohort_tracker.py

  Show description for 61683f5
  

  eroell

  and

  Zethson

  authored
  61683f5

• remove old comments, better variable names, simplify adata check

  eroell

  committed
  9663cfb

• Merge branch 'pop-log' of github.com:eroell/ehrapy into pop-log

  eroell

  committed
  0bd391a

• fix two doc typos

  eroell

  committed
  d638a88

• Merge branch 'main' of github.com:eroell/ehrapy

  eroell

  committed
  50118d3

• Merge branch 'main' into pop-log

  eroell

  committed
  2b78475

• identical Returns field

  eroell

  committed
  3c92f26