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Undergraduate research modelling & simulating stochastic bacillus anthracis growth

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.vscode
.vscode
 
 
LaTeX
LaTeX
 
 
gillespy2
gillespy2
 
 
.gitignore
.gitignore
 
 
Anthrax_Graph.png
Anthrax_Graph.png
 
 
DayModel - Adding Species.ipynb
DayModel - Adding Species.ipynb
 
 
DayModel - Full Reactions from LaTeX.ipynb
DayModel - Full Reactions from LaTeX.ipynb
 
 
DayModel - Phagocytosis - With new propensity function.ipynb
DayModel - Phagocytosis - With new propensity function.ipynb
 
 
DayModel - TMLN.ipynb
DayModel - TMLN.ipynb
 
 
DayModel - k2 value at ns = 1.ipynb
DayModel - k2 value at ns = 1.ipynb
 
 
DayModel - k2 value at ns = 2.ipynb
DayModel - k2 value at ns = 2.ipynb
 
 
DayModel - k2 value at ns = 3.ipynb
DayModel - k2 value at ns = 3.ipynb
 
 
DayModel - k2 value at ns = 4.ipynb
DayModel - k2 value at ns = 4.ipynb
 
 
DayModel - k2 value at ns = 5.ipynb
DayModel - k2 value at ns = 5.ipynb
 
 
Lung Submodel - First Attempt at fixing underflow issue.ipynb
Lung Submodel - First Attempt at fixing underflow issue.ipynb
 
 
Lung Submodel - Parameter Space Exploration.ipynb
Lung Submodel - Parameter Space Exploration.ipynb
 
 
Lung Submodel - Troubleshooting Heatmap Anomalies.ipynb
Lung Submodel - Troubleshooting Heatmap Anomalies.ipynb
 
 
Lung Submodel.ipynb
Lung Submodel.ipynb
 
 
README.md
README.md
 
 
Submodel - Lung+Lymph (Average; n_s = 3.38).ipynb
Submodel - Lung+Lymph (Average; n_s = 3.38).ipynb
 
 
Submodel - Lung+Lymph (High n_s).ipynb
Submodel - Lung+Lymph (High n_s).ipynb
 
 
Submodel - Lung+Lymph (Low).ipynb
Submodel - Lung+Lymph (Low).ipynb
 
 
Submodel - Lung+Lymph - Presentation Prep.ipynb
Submodel - Lung+Lymph - Presentation Prep.ipynb
 
 
Submodel - Lung+Lymph.ipynb
Submodel - Lung+Lymph.ipynb
 
 
Untitled.ipynb
Untitled.ipynb
 
 
__init__.py
__init__.py
 
 
example_models.py
example_models.py
 
 

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Bacillus_Anthracis_Simulation

Must have Python 3 (at least 3.6) installed Install Jupyter Notebook

Open Submodel - Lung+Lymph.ipynb

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Undergraduate research modelling & simulating stochastic bacillus anthracis growth

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