TPMS is a Bioinformatics tool, designed to perform pattern-matching queries in a collection of phylogenetic trees.
TPMS: a set of utilities for querying collections of gene trees, 2013 Thomas Bigot, Vincent Daubin, Florent Lassalle and Guy Perrière BMC Bioinformatics 2013 14:109 DOI: 10.1186/1471-2105-14-109 http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-109
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installation / compilation https://github.com/tbigot/tpms/wiki/INSTALL
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TPMS_MKDB (building collections) https://github.com/tbigot/tpms/wiki/tpms_mkdb
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TPMS_QUERY (querying a collection) https://github.com/tbigot/tpms/wiki/tpms_query
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TPMS_COMPUTATIONS https://github.com/tbigot/tpms/wiki/tpms_computations
More generally, please refer to the online wiki: https://github.com/tbigot/tpms/wiki/