Installation guide

Welcome to aPhyloGeo! This guide will help you set up and use the project with Poetry and Makefile.

Prerequisites

Ensure you have the following installed on your machine:

• Python

• Poetry

  pip install poetry

Installation

To install aPhyloGeo, follow these steps:

1. Clone the repository:

   git clone https://github.com/tahiri-lab/aPhyloGeo.git

2. Navigate to the repository:

   cd aPhyloGeo

3. Install dependencies

   a. with Poetry:

   poetry install

   b. with pip:

   pip install -r requirements.txt

Usage

Once you have installed aPhyloGeo, you can use it by following these steps:

1. Open a terminal and navigate to the project directory.

2. Activate the Poetry virtual environment:

   poetry shell

3. Run the application:

   make

4. Explore the features and functionalities of aPhyloGeo.

Common Tasks

Running Tests

To run tests, use the Makefile:

make test