rename to aphylogeo

tahiri-lab · Oct 2, 2023 · efd7ae9 · efd7ae9
1 parent 65e24a8
commit efd7ae9
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Showing 11 changed files with 10 additions and 10 deletions.
diff --git a/temp/__init__.py → aphylogeo/__init__.py b/temp/__init__.py → aphylogeo/__init__.py
diff --git a/temp/alignement.py → aphylogeo/alignement.py b/temp/alignement.py → aphylogeo/alignement.py
diff --git a/temp/main.py → aphylogeo/main.py b/temp/main.py → aphylogeo/main.py
@@ -1,5 +1,5 @@
-from aPhyloGeo.utils import geneticPipeline, climaticPipeline
-from aPhyloGeo.params import Params
+from aphylogeo.utils import geneticPipeline, climaticPipeline
+from aphylogeo.params import Params
 import pandas as pd 
 
 titleCard = r"""
@@ -12,7 +12,7 @@
  \/__/\/_/ \/_/    \/_/\/_/`/___/> \/____/\/___/  \/___/  \/____/\/___/
                               /\___/
                               \/__/
-"""  # https://patorjk.com/software/taag/#p=display&f=Larry%203D&t=aPhyloGeo%20
+"""  # https://patorjk.com/software/taag/#p=display&f=Larry%203D&t=aphylogeo%20
 
 if __name__ == "__main__":
     print(titleCard + "\n")

diff --git a/temp/multiProcessor.py → aphylogeo/multiProcessor.py b/temp/multiProcessor.py → aphylogeo/multiProcessor.py
diff --git a/temp/params.py → aphylogeo/params.py b/temp/params.py → aphylogeo/params.py
diff --git a/temp/params.yaml → aphylogeo/params.yaml b/temp/params.yaml → aphylogeo/params.yaml
diff --git a/temp/requirements.txt → aphylogeo/requirements.txt b/temp/requirements.txt → aphylogeo/requirements.txt
diff --git a/temp/utils.py → aphylogeo/utils.py b/temp/utils.py → aphylogeo/utils.py
diff --git a/pyproject.toml b/pyproject.toml
@@ -26,4 +26,4 @@ requires = ["poetry-core"]
 build-backend = "poetry.core.masonry.api"
 
 [tool.pytest.ini_options]
-pythonpath = "aPhyloGeo/"
+pythonpath = "aphylogeo/"
diff --git a/tests/test_climatic.py b/tests/test_climatic.py
@@ -1,7 +1,7 @@
 import os
 import pandas as pd
-from aPhyloGeo.params import Params
-from aPhyloGeo import utils
+from aphylogeo.params import Params
+from aphylogeo import utils
 from pathlib import Path
 import pytest
 
@@ -21,7 +21,7 @@ def climaticTreesSetup():
     return utils.climaticPipeline(pd.read_csv(p.file_name), p.names)
 
 
-#@pytest.mark.skip(reason="Work in progress, new version matrix return 0.00000 instead than 0")
+
 def test_climaticPipeline():
     '''
     This test is used to test the climaticPipeline function.

diff --git a/tests/test_genetic.py b/tests/test_genetic.py
@@ -5,9 +5,9 @@
 from Bio.Phylo.PhyloXML import Phylogeny
 import os
 from pathlib import Path
-from aPhyloGeo.params import Params
-from aPhyloGeo.alignement import AlignSequences
-from aPhyloGeo import utils
+from aphylogeo.params import Params
+from aphylogeo.alignement import AlignSequences
+from aphylogeo import utils
 import pandas as pd