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update SBMLNetwork.
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@luciansmith
luciansmith committed Dec 13, 2024
1 parent 1bb197e commit a2c3d10
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion third_party/SBMLNetwork
Submodule SBMLNetwork updated 54 files
+110 −0 .github/workflows/build-libsbmlnetworkjs.yml
+3 −0 .github/workflows/build.yml
+10 −8 CMakeLists.txt
+1 −1 VERSION.txt
+36 −36 docs/api_reference/c_api_index.rst
+12 −12 docs/api_reference/cpp_api_index.rst
+2 −2 src/CMakeLists.txt
+889 −304 src/bindings/python/ctypes/libsbmlnetwork.py.cmake
+2 −2 src/bindings/python/ctypes/sbmlnetwork/src/sbmlnetwork/sbmlnetwork.py
+1 −1 src/bindings/python/ctypes/sbmlnetwork/tests/test_with_all_models.py
+838 −0 src/bindings/python/ctypes/sbmlnetwork/tests/test_with_specific_models.py
+332 −132 src/c_api/libsbmlnetwork_c_api.cpp
+689 −176 src/c_api/libsbmlnetwork_c_api.h
+13 −12 src/features/alias_elements/libsbmlnetwork_alias_reaction.cpp
+3 −3 src/features/alias_elements/libsbmlnetwork_alias_reaction.h
+2 −2 src/features/alias_elements/libsbmlnetwork_alias_species.cpp
+1 −1 src/features/alias_elements/libsbmlnetwork_alias_species.h
+5 −5 src/features/autolayout/libsbmlnetwork_autolayout.cpp
+2 −2 src/features/autolayout/libsbmlnetwork_autolayout.h
+4 −4 src/features/autolayout/libsbmlnetwork_autolayout_connection.cpp
+2 −2 src/features/autolayout/libsbmlnetwork_autolayout_connection.h
+4 −4 src/features/autolayout/libsbmlnetwork_autolayout_node.cpp
+3 −3 src/features/autolayout/libsbmlnetwork_autolayout_node.h
+9 −9 src/features/autolayout/libsbmlnetwork_fruchterman_reingold_algorithm.cpp
+5 −5 src/features/autolayout/libsbmlnetwork_fruchterman_reingold_algorithm.h
+311 −259 src/features/colors/libsbmlnetwork_colors.cpp
+19 −6 src/features/colors/libsbmlnetwork_colors.h
+5 −0 src/features/defaults/libsbmlnetwork_defaults_render.cpp
+2 −0 src/features/defaults/libsbmlnetwork_defaults_render.h
+17 −17 src/features/error_log/libsbmlnetwork_error_log.cpp
+14 −14 src/features/error_log/libsbmlnetwork_error_log.h
+645 −0 src/features/hide_elements/libsbmlnetwork_hide_elements.cpp
+122 −0 src/features/hide_elements/libsbmlnetwork_hide_elements.h
+0 −67 src/features/hide_elements/libsbmlnetwork_hide_species.cpp
+0 −26 src/features/hide_elements/libsbmlnetwork_hide_species.h
+57 −29 src/features/set_layout_features/libsbmlnetwork_set_layout_features.cpp
+10 −2 src/features/set_layout_features/libsbmlnetwork_set_layout_features.h
+1 −1 src/features/update_curves/libsbmlnetwork_update_curves.cpp
+107 −56 src/features/user_data/libsbmlnetwork_user_data.cpp
+15 −15 src/features/user_data/libsbmlnetwork_user_data.h
+161 −41 src/libsbmlnetwork_layout.cpp
+125 −25 src/libsbmlnetwork_layout.h
+135 −25 src/libsbmlnetwork_layout_helpers.cpp
+16 −2 src/libsbmlnetwork_layout_helpers.h
+1 −1 src/libsbmlnetwork_layout_render.h
+36 −41 src/libsbmlnetwork_render.h
+32 −14 src/libsbmlnetwork_render_helpers.cpp
+4 −0 src/libsbmlnetwork_render_helpers.h
+14 −83 src/libsbmlnetwork_sbmldocument.cpp
+26 −78 src/libsbmlnetwork_sbmldocument.h
+139 −99 src/libsbmlnetwork_sbmldocument_layout.cpp
+175 −93 src/libsbmlnetwork_sbmldocument_layout.h
+384 −19 src/libsbmlnetwork_sbmldocument_render.cpp
+758 −95 src/libsbmlnetwork_sbmldocument_render.h

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