fix: dockerfile

modules/protocol_compiler/Dockerfile

@@ -1,7 +1,7 @@
 ## base container
 FROM python:3.8 as base_container
 RUN apt-get update \
-    && apt-get install --yes rename procps curl zsh git editorconfig \
+    && apt-get install --yes rename procps curl \
     && apt-get autoremove \
     && apt-get clean \
     && rm -rf /var/lib/apt/lists/*

modules/report_compiler/Dockerfile

@@ -0,0 +1,22 @@
+FROM ghcr.io/stracquadaniolab/code-r:4.3.2-23.12 as base_container
+RUN apt-get update \
+    && apt-get install --yes rename procps curl \
+    && apt-get autoremove \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/*
+CMD ["/bin/bash"]
+
+## main container
+FROM base_container
+# adding opencontainer labels to link registry to github repository
+LABEL org.opencontainers.image.title="enzyme-screening-platform-opentrons"
+LABEL org.opencontainers.image.description="End-to-end eznyme screening platform for argB."
+LABEL org.opencontainers.image.url="https://github.com/stracquadaniolab/enzyme-screening-platform-opentrons"
+LABEL org.opencontainers.image.documentation="https://github.com/stracquadaniolab/enzyme-screening-platform-opentrons"
+LABEL org.opencontainers.image.source="https://github.com/stracquadaniolab/enzyme-screening-platform-opentrons"
+LABEL org.opencontainers.image.vendor="stracquadaniolab"
+LABEL org.opencontainers.image.authors="Martyna Kasprzyk"
+LABEL org.opencontainers.image.revision="v0.1.0"
+
+COPY requirements.txt requirements.txt 
+RUN pip install --no-cache-dir -r requirements.txt