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1. PyLit PyLit Public

   Conduct a mass literature review using Python by inputting a key word or phrase of interest. This Python script can be used to query the PubMed database using Biopython. Input user email, how many …

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2. WGCNA-Turorial WGCNA-Turorial Public

   This is a tutorial of the weighted gene correlation network analysis (WGCNA) package from Dept. of Human Genetics, UC Los Angeles.

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3. RNA-seq-differential-expression-pathway-analysis-with-Sailfish-DESeq2-GAGE-and-Pathview RNA-seq-differential-expression-pathway-analysis-with-Sailfish-DESeq2-GAGE-and-Pathview Public

   This tutorial shows an example of RNA-seq data analysis with DESeq2, followed by KEGG pathway analysis using GAGE and plotting using Pathview.

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4. NormSeq NormSeq Public

   Easy to use RNA-sequencing data normalization tool built in C++ for use in Python. Can handle many popular normalization techniques.

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5. LFOmics LFOmics Public

   Integrate multiomic datasets using autoencoder-based feature extraction and perform GSEApy enrichr functional enrichment analysis on top features.

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6. Nextflow-Pipelines Nextflow-Pipelines Public

   Nextflow pipelines for various bioinformatics, machine learning, and statistical analyses.

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