Warn on input data int conversion #621
Workflow file for this run
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# Github Actions workflow to check CmdStanR | |
# yamllint disable rule:line-length | |
name: Unit tests - WSL Backend | |
'on': | |
push: | |
branches: | |
- master | |
pull_request: | |
branches: | |
- master | |
jobs: | |
WSL-R-CMD-check: | |
if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
runs-on: windows-latest | |
name: windows-latest-WSLv1 | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
NOT_CRAN: true | |
steps: | |
- name: cmdstan env vars | |
run: | | |
echo "CMDSTAN_PATH=${HOME}/.cmdstan" >> $GITHUB_ENV | |
shell: bash | |
- uses: n1hility/cancel-previous-runs@v3 | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
if: "!startsWith(github.ref, 'refs/tags/') && github.ref != 'refs/heads/master'" | |
- uses: actions/checkout@v4 | |
- uses: r-lib/actions/[email protected] | |
- uses: r-lib/actions/[email protected] | |
- uses: r-lib/actions/[email protected] | |
with: | |
extra-packages: any::rcmdcheck, local::. | |
- uses: Vampire/setup-wsl@v3 | |
with: | |
distribution: Ubuntu-22.04 | |
use-cache: 'false' | |
set-as-default: 'true' | |
- name: Install WSL Dependencies | |
run: | | |
# Bugfix for current gzip (for unpacking apt packages) under WSLv1: | |
# https://github.com/microsoft/WSL/issues/8219#issuecomment-1110508016 | |
echo -en '\x10' | sudo dd of=/usr/bin/gzip count=1 bs=1 conv=notrunc seek=$((0x189)) | |
sudo apt-get update | |
sudo apt-get install -y build-essential libopenmpi-dev | |
shell: wsl-bash {0} | |
- name: Install cmdstan | |
run: | | |
cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
cmdstanr::install_cmdstan(cores = 2, wsl = TRUE, overwrite = TRUE) | |
shell: Rscript {0} | |
- name: Session info | |
run: | | |
options(width = 100) | |
pkgs <- installed.packages()[, "Package"] | |
sessioninfo::session_info(pkgs, include_base = TRUE) | |
shell: Rscript {0} | |
- uses: r-lib/actions/[email protected] | |
env: | |
_R_CHECK_CRAN_INCOMING_: false | |
- name: Show testthat output | |
if: always() | |
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
shell: bash | |
- name: Upload check results | |
if: failure() | |
uses: actions/upload-artifact@v4 | |
with: | |
name: wsl-backend-results | |
path: check |