Custom CmdStan tarball unit tests #33
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# Github Actions workflow to check CmdStanR tarball | |
# yamllint disable rule:line-length | |
name: Custom CmdStan tarball unit tests | |
'on': | |
workflow_dispatch: | |
inputs: | |
tarball_url: | |
description: 'CmdStan tarball URL to test with.' | |
required: true | |
default: 'latest' | |
jobs: | |
tarball-check: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: macOS-latest, r: 'release', rtools: ''} | |
- {os: windows-latest, r: 'release', rtools: '44'} | |
- {os: ubuntu-20.04, r: 'release', rtools: ''} | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
CMDSTAN_TEST_TARBALL_URL: ${{ github.event.inputs.tarball_url }} | |
NOT_CRAN: true | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install system dependencies | |
if: runner.os == 'Linux' | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y libcurl4-openssl-dev || true | |
sudo apt-get install -y openmpi-bin openmpi-common libopenmpi-dev || true | |
- uses: r-lib/actions/[email protected] | |
with: | |
r-version: ${{ matrix.config.r }} | |
rtools-version: ${{ matrix.config.rtools }} | |
- uses: r-lib/actions/[email protected] | |
- name: Query dependencies | |
run: | | |
install.packages('remotes') | |
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
shell: Rscript {0} | |
- name: Cache R packages | |
if: runner.os != 'Windows' | |
uses: actions/cache@v4 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
- name: Install dependencies | |
run: | | |
remotes::install_deps(dependencies = TRUE) | |
remotes::install_cran("rcmdcheck") | |
remotes::install_local(path = ".", INSTALL_opts = "--no-test-load") | |
cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
if (Sys.getenv("CMDSTAN_TEST_TARBALL_URL") == "latest") { | |
cmdstanr::install_cmdstan(cores = 2, overwrite = TRUE) | |
} else { | |
cmdstanr::install_cmdstan(cores = 2, overwrite = TRUE, release_url = "${{ github.event.inputs.tarball_url }}") | |
} | |
shell: Rscript {0} | |
- name: Session info | |
run: | | |
options(width = 100) | |
pkgs <- installed.packages()[, "Package"] | |
sessioninfo::session_info(pkgs, include_base = TRUE) | |
shell: Rscript {0} | |
- name: Check | |
env: | |
_R_CHECK_CRAN_INCOMING_: false | |
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--ignore-vignettes"), build_args = c("--no-build-vignettes"), error_on = "warning", check_dir = "check") | |
shell: Rscript {0} | |
- name: Show testthat output | |
if: always() | |
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
shell: bash | |
- name: Upload check results | |
if: failure() | |
uses: actions/upload-artifact@v4 | |
with: | |
name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
path: check |