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Update model.R

Update model.R #649

---
# Github Actions workflow to check CmdStanR
# yamllint disable rule:line-length
name: Unit tests - WSL Backend
'on':
push:
branches:
- master
pull_request:
branches:
- master
jobs:
WSL-R-CMD-check:
if: "! contains(github.event.head_commit.message, '[ci skip]')"
runs-on: windows-latest
name: windows-latest-WSLv1
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
NOT_CRAN: true
steps:
- name: cmdstan env vars
run: |
echo "CMDSTAN_PATH=${HOME}/.cmdstan" >> $GITHUB_ENV
shell: bash
- uses: n1hility/cancel-previous-runs@v3
with:
token: ${{ secrets.GITHUB_TOKEN }}
if: "!startsWith(github.ref, 'refs/tags/') && github.ref != 'refs/heads/master'"
- uses: actions/checkout@v4
- uses: r-lib/actions/[email protected]
- uses: r-lib/actions/[email protected]
- uses: r-lib/actions/[email protected]
with:
extra-packages: any::rcmdcheck, local::.
- uses: Vampire/setup-wsl@v3
with:
distribution: Ubuntu-22.04
use-cache: 'false'
set-as-default: 'true'
- name: Install WSL Dependencies
run: |
# Bugfix for current gzip (for unpacking apt packages) under WSLv1:
# https://github.com/microsoft/WSL/issues/8219#issuecomment-1110508016
echo -en '\x10' | sudo dd of=/usr/bin/gzip count=1 bs=1 conv=notrunc seek=$((0x189))
sudo apt-get update
sudo apt-get install -y build-essential libopenmpi-dev
shell: wsl-bash {0}
- name: Install cmdstan
run: |
cmdstanr::check_cmdstan_toolchain(fix = TRUE)
cmdstanr::install_cmdstan(cores = 2, wsl = TRUE, overwrite = TRUE)
shell: Rscript {0}
- name: Session info
run: |
options(width = 100)
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}
- uses: r-lib/actions/[email protected]
env:
_R_CHECK_CRAN_INCOMING_: false
- name: Show testthat output
if: always()
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash
- name: Upload check results
if: failure()
uses: actions/upload-artifact@v4
with:
name: wsl-backend-results
path: check