Code for classifying whole genome B. anthracis isolates
The python code in this repository can be used to classify B. anthracis isolates according to the methodology described in "A classification framework for Bacillus anthracis defined by global genomic structure" published in Evolutionary Application in December of 2019: https://doi.org/10.1111/eva.12911
Because this is a modified version of code originally written by Kat Holt and Zoe Dyson for S. typhi, analagous usage intructions can be found here: https://github.com/katholt/genotyphi#original-implementation-pre-mapped-data