add vignettes

spatPomp-org · Aug 6, 2024 · eb6c6b5 · eb6c6b5
1 parent 646e270
commit eb6c6b5
Show file tree

Hide file tree

Showing 9 changed files with 27 additions and 28 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -5,6 +5,12 @@ scripts
 tools
 wiki
 www
+lib
+libs
+library
+check
+Makefile
+rules.mk
 tests/Makefile
 tests/(.+?)\.png$
 tests/(.+?)\.pdf$
@@ -14,9 +20,10 @@ inst/doc/(.+?).md
 inst/doc/(.+?).Rmd
 man/roxygen
 Doxyfile
+CONTRIBUTING\.md$
+CRAN\.md$
 LICENSE\.md$
 README\.md$
-CRAN\.md$
 TODO\.md$
 ^\.gitignore$
 \.github
@@ -36,15 +43,6 @@ TODO\.md$
 \.includes
 \.headers
 \.tests
-Makefile
-rules.mk
-scripts
-lib
-libs
-library
-check
-www
-^(.+?)\.pdf
 ^(.+?)\.tar\.gz
 ^(.+?)\.tgz
 ^(.+?)\.zip

diff --git a/.gitignore b/.gitignore
@@ -19,7 +19,6 @@
 *.so
 *.gcda
 *.gcno
-*.pdf
 /scripts
 lib
 library

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: spatPomp
 Type: Package
 Title: Inference for Spatiotemporal Partially Observed Markov Processes
-Version: 0.35.1
-Date: 2024-06-02
+Version: 0.35.2
+Date: 2024-08-05
 Authors@R: c(
   person("Kidus", "Asfaw", email = "[email protected]", role = c("aut")),
   person("Edward", "Ionides", email = "[email protected]",role = c("cre","aut")),
@@ -77,4 +77,4 @@ Collate:
     'vec_dmeasure.R'
     'vec_rmeasure.R'
     'vunit_measure.R'
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
diff --git a/man/iubf.Rd b/man/iubf.Rd
diff --git a/man/simulate.Rd b/man/simulate.Rd
diff --git a/vignettes/ibpf-original.pdf b/vignettes/ibpf-original.pdf
diff --git a/vignettes/ibpf.Rnw b/vignettes/ibpf.Rnw
@@ -0,0 +1,6 @@
+\documentclass{article}
+\usepackage{pdfpages}
+%\VignetteIndexEntry{ibpf}
+\begin{document}
+\includepdf[pages=-, fitpaper=true]{ibpf-original.pdf}
+\end{document}
diff --git a/vignettes/tutorial-original.pdf b/vignettes/tutorial-original.pdf
diff --git a/vignettes/tutorial.Rnw b/vignettes/tutorial.Rnw
@@ -0,0 +1,6 @@
+\documentclass{article}
+\usepackage{pdfpages}
+%\VignetteIndexEntry{tutorial}
+\begin{document}
+\includepdf[pages=-, fitpaper=true]{tutorial-original.pdf}
+\end{document}
-Original file line number
+Diff line change
@@ Expand Up / @@ -19,7 +19,6 @@ @@
     *.so
     *.gcda
     *.gcno
-    *.pdf
     /scripts
     lib
     library
@@ Expand Down @@