Updated Conda env

sparcians · Nov 14, 2024 · 6542e13 · 6542e13
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diff --git a/conda/README.md b/conda/README.md
@@ -1,10 +1,7 @@
 # Conda environments
 
 The conda environment created using yml file specification in this
-directory can be used to build and run shinro, the [Sparta Modeling
-Framework](https://github.com/sparcians/map/tree/master/sparta), [STF
-Library](https://github.com/sparcians/stf_lib) and [STF
-Tools](https://github.com/sparcians/stf_tools).
+directory can be used to build and run Atlas.
 
 ## Download and install miniconda
 
@@ -13,10 +10,6 @@ If `conda` is not already set up or the preference is to have a local
 
 ## Create a New Environment or Update Existing Conda Environment
 
-** If these steps do not work, follow the directions on
-   [Map/Sparta](https://github.com/sparcians/map/tree/master#building-map)
-   instead **
-
 A new environment can be created using `environment.yaml` file as follows:
 
 ```
@@ -30,5 +23,3 @@ If an environment named `riscv_func_model` exists, it can be updated as follows:
 ```
 conda env update --file environment.yml  --prune
 ```
-
-The file `environment_from_history.yml` provides a minimal specification, in case, there is a need to build the conda environment from scratch.
diff --git a/conda/environment.yml b/conda/environment.yml
@@ -2,81 +2,198 @@ name: riscv_func_model
 channels:
   - conda-forge
 dependencies:
-  - _libgcc_mutex>=0.1=conda_forge
-  - _openmp_mutex>=4.5=2_gnu
-  - binutils_impl_linux-64>=2.39=he00db2b_1
-  - binutils_linux-64>=2.39=h5fc0e48_11
-  - boost>=1.76.0=py310h7c3ba0c_1
-  - boost-cpp>=1.76.0=h312852a_1
-  - bzip2>=1.0.8=h7f98852_4
-  - c-ares>=1.18.1=h7f98852_0
-  - ca-certificates>=2023.11.17=hbcca054_0
-  - clang>=14.0.6=ha770c72_1
-  - clang-14>=14.0.6=default_h7634d5b_1
-  - clangxx>=14.0.6=default_h1e1816b_1
-  - cmake>=3.25.2=h077f3f9_0
-  - cppcheck>=2.7.5=py310h94ea96f_1
-  - curl>=7.87.0=h6312ad2_0
-  - doxygen>=1.8.20=had0d8f1_0
-  - expat>=2.5.0=h27087fc_0
-  - gcc>=10.4.0=hb92f740_13
-  - gcc_impl_linux-64>=10.4.0=h5231bdf_19
-  - gcc_linux-64>=10.4.0=h9215b83_11
-  - gxx_impl_linux-64>=10.4.0=h5231bdf_19
-  - gxx_linux-64>=10.4.0=h6e491c6_11
-  - hdf5>=1.10.6=nompi_h6a2412b_1114
-  - icu>=68.2=h9c3ff4c_0
-  - kernel-headers_linux-64>=2.6.32=he073ed8_15
-  - keyutils>=1.6.1=h166bdaf_0
-  - krb5>=1.20.1=hf9c8cef_0
-  - ld_impl_linux-64>=2.39=hcc3a1bd_1
-  - libblas>=3.9.0=16_linux64_openblas
-  - libcblas>=3.9.0=16_linux64_openblas
-  - libclang-cpp14>=14.0.6=default_h7634d5b_1
-  - libcurl>=7.87.0=h6312ad2_0
-  - libedit>=3.1.20191231=he28a2e2_2
-  - libev>=4.33=h516909a_1
-  - libffi>=3.4.2=h7f98852_5
-  - libgcc-devel_linux-64>=10.4.0=hd38fd1e_19
-  - libgcc-ng>=12.2.0=h65d4601_19
-  - libgfortran-ng>=12.2.0=h69a702a_19
-  - libgfortran5>=12.2.0=h337968e_19
-  - libgomp>=12.2.0=h65d4601_19
-  - libiconv>=1.17=h166bdaf_0
-  - liblapack>=3.9.0=16_linux64_openblas
-  - libllvm14>=14.0.6=hcd5def8_4
-  - libnghttp2>=1.51.0=hdcd2b5c_0
-  - libnsl>=2.0.0=h7f98852_0
-  - libopenblas>=0.3.21=pthreads_h78a6416_3
-  - libsanitizer>=10.4.0=h5246dfb_19
-  - libsqlite>=3.40.0=h753d276_0
-  - libssh2>=1.10.0=haa6b8db_3
-  - libstdcxx-devel_linux-64>=10.4.0=hd38fd1e_19
-  - libstdcxx-ng>=12.2.0=h46fd767_19
-  - libuuid>=2.32.1=h7f98852_1000
-  - libuv>=1.44.2=h166bdaf_0
-  - libzlib>=1.2.13=h166bdaf_4
-  - lld>=14.0.6=h07fd6de_1
-  - llvm-tools>=14.0.6=hcd5def8_4
-  - ncurses>=6.3=h27087fc_1
-  - numpy>=1.24.1=py310h08bbf29_0
-  - openssl>=1.1.1w=hd590300_0
-  - pcre>=8.45=h9c3ff4c_0
-  - pip>=23.3.1=pyhd8ed1ab_0
-  - pygments>=2.11.2=pyhd8ed1ab_0
-  - python>=3.10.8=h257c98d_0_cpython
-  - python_abi>=3.10=3_cp310
-  - pyyaml>=6.0.1=py310h2372a71_1
-  - rapidjson>=1.1.0=he1b5a44_1002
-  - readline>=8.1.2=h0f457ee_0
-  - rhash>=1.4.3=h166bdaf_0
-  - setuptools>=68.2.2=pyhd8ed1ab_0
-  - sqlite>=3.36.0=h9cd32fc_2
-  - sysroot_linux-64>=2.12=he073ed8_15
-  - tk>=8.6.12=h27826a3_0
-  - tzdata>=2022g=h191b570_0
-  - wheel>=0.42.0=pyhd8ed1ab_0
-  - xz>=5.2.6=h166bdaf_0
-  - yaml-cpp>=0.7.0=h27087fc_2
-  - zlib>=1.2.13=h166bdaf_4
-  - zstd>=1.5.2=h6239696_4
+  - _libgcc_mutex=0.1=conda_forge
+  - _openmp_mutex=4.5=2_gnu
+  - adwaita-icon-theme=47.0=unix_0
+  - alsa-lib=1.2.12=h4ab18f5_0
+  - asttokens=2.4.1=pyhd8ed1ab_0
+  - at-spi2-atk=2.38.0=h0630a04_3
+  - at-spi2-core=2.40.3=h0630a04_0
+  - atk-1.0=2.38.0=h04ea711_2
+  - binutils_impl_linux-64=2.43=h4bf12b8_2
+  - binutils_linux-64=2.43=h4852527_2
+  - boost=1.78.0=py310hc4a4660_4
+  - boost-cpp=1.78.0=h2c5509c_4
+  - brotli=1.1.0=hb9d3cd8_2
+  - brotli-bin=1.1.0=hb9d3cd8_2
+  - bzip2=1.0.8=h4bc722e_7
+  - c-ares=1.34.3=heb4867d_0
+  - ca-certificates=2024.8.30=hbcca054_0
+  - cairo=1.18.0=hbb29018_2
+  - certifi=2024.8.30=pyhd8ed1ab_0
+  - clang=15.0.7=h39da44c_5
+  - clang-15=15.0.7=default_h127d8a8_5
+  - clangxx=15.0.7=default_h127d8a8_5
+  - cmake=3.30.5=hf9cb763_0
+  - contourpy=1.2.1=py310hd41b1e2_0
+  - cppcheck=2.16.0=py310hc8a15be_0
+  - cycler=0.12.1=pyhd8ed1ab_0
+  - cython=3.0.11=py310h5b1441d_3
+  - dbus=1.13.6=h5008d03_3
+  - decorator=5.1.1=pyhd8ed1ab_0
+  - doxygen=1.11.0=h9d7c8fd_0
+  - epoxy=1.5.10=h166bdaf_1
+  - exceptiongroup=1.2.2=pyhd8ed1ab_0
+  - executing=2.1.0=pyhd8ed1ab_0
+  - expat=2.6.4=h5888daf_0
+  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
+  - font-ttf-inconsolata=3.000=h77eed37_0
+  - font-ttf-source-code-pro=2.038=h77eed37_0
+  - font-ttf-ubuntu=0.83=h77eed37_3
+  - fontconfig=2.15.0=h7e30c49_1
+  - fonts-conda-ecosystem=1=0
+  - fonts-conda-forge=1=0
+  - fonttools=4.54.1=py310h89163eb_1
+  - freetype=2.12.1=h267a509_2
+  - fribidi=1.0.10=h36c2ea0_0
+  - gcc_impl_linux-64=13.3.0=hfea6d02_1
+  - gcc_linux-64=13.3.0=hc28eda2_5
+  - gdk-pixbuf=2.42.12=hb9ae30d_0
+  - glib=2.82.2=h44428e9_0
+  - glib-tools=2.82.2=h4833e2c_0
+  - gmp=6.3.0=hac33072_2
+  - graphite2=1.3.13=h59595ed_1003
+  - gst-plugins-base=1.24.7=h0a52356_0
+  - gstreamer=1.24.7=hf3bb09a_0
+  - gtk3=3.24.43=h0359ba6_0
+  - gxx_impl_linux-64=13.3.0=hdbfa832_1
+  - gxx_linux-64=13.3.0=h6834431_5
+  - harfbuzz=8.5.0=hfac3d4d_0
+  - hdf5=1.14.4=nompi_h2d575fe_103
+  - hicolor-icon-theme=0.17=ha770c72_2
+  - icu=73.2=h59595ed_0
+  - ipython=8.29.0=pyh707e725_0
+  - jedi=0.19.2=pyhff2d567_0
+  - kernel-headers_linux-64=3.10.0=he073ed8_18
+  - keyutils=1.6.1=h166bdaf_0
+  - kiwisolver=1.4.7=py310h3788b33_0
+  - krb5=1.21.3=h659f571_0
+  - lcms2=2.16=hb7c19ff_0
+  - ld_impl_linux-64=2.43=h712a8e2_2
+  - lerc=4.0.0=h27087fc_0
+  - libaec=1.1.3=h59595ed_0
+  - libblas=3.9.0=25_linux64_openblas
+  - libbrotlicommon=1.1.0=hb9d3cd8_2
+  - libbrotlidec=1.1.0=hb9d3cd8_2
+  - libbrotlienc=1.1.0=hb9d3cd8_2
+  - libcblas=3.9.0=25_linux64_openblas
+  - libclang-cpp15=15.0.7=default_h127d8a8_5
+  - libcups=2.3.3=h4637d8d_4
+  - libcurl=8.10.1=hbbe4b11_0
+  - libdeflate=1.22=hb9d3cd8_0
+  - libedit=3.1.20191231=he28a2e2_2
+  - libev=4.33=hd590300_2
+  - libexpat=2.6.4=h5888daf_0
+  - libffi=3.4.2=h7f98852_5
+  - libgcc=14.2.0=h77fa898_1
+  - libgcc-devel_linux-64=13.3.0=h84ea5a7_101
+  - libgcc-ng=14.2.0=h69a702a_1
+  - libgfortran=14.2.0=h69a702a_1
+  - libgfortran-ng=14.2.0=h69a702a_1
+  - libgfortran5=14.2.0=hd5240d6_1
+  - libglib=2.82.2=h2ff4ddf_0
+  - libgomp=14.2.0=h77fa898_1
+  - libiconv=1.17=hd590300_2
+  - libjpeg-turbo=3.0.0=hd590300_1
+  - liblapack=3.9.0=25_linux64_openblas
+  - libllvm15=15.0.7=hb3ce162_4
+  - libnghttp2=1.64.0=h161d5f1_0
+  - libnsl=2.0.1=hd590300_0
+  - libogg=1.3.5=h4ab18f5_0
+  - libopenblas=0.3.28=pthreads_h94d23a6_1
+  - libopus=1.3.1=h7f98852_1
+  - libpng=1.6.44=hadc24fc_0
+  - librsvg=2.58.2=hf0cb8fb_0
+  - libsanitizer=13.3.0=heb74ff8_1
+  - libsqlite=3.47.0=hadc24fc_1
+  - libssh2=1.11.0=h0841786_0
+  - libstdcxx=14.2.0=hc0a3c3a_1
+  - libstdcxx-devel_linux-64=13.3.0=h84ea5a7_101
+  - libstdcxx-ng=14.2.0=h4852527_1
+  - libtiff=4.7.0=he137b08_1
+  - libuuid=2.38.1=h0b41bf4_0
+  - libuv=1.49.2=hb9d3cd8_0
+  - libvorbis=1.3.7=h9c3ff4c_0
+  - libwebp-base=1.4.0=hd590300_0
+  - libxcb=1.17.0=h8a09558_0
+  - libxcrypt=4.4.36=hd590300_1
+  - libxkbcommon=1.7.0=h2c5496b_1
+  - libxml2=2.12.7=h4c95cb1_3
+  - libzlib=1.3.1=hb9d3cd8_2
+  - llvm-tools=15.0.7=hb3ce162_4
+  - lz4-c=1.9.4=hcb278e6_0
+  - make=4.4.1=hb9d3cd8_2
+  - matplotlib-base=3.8.4=py310hef631a5_2
+  - matplotlib-inline=0.1.7=pyhd8ed1ab_0
+  - mpfr=4.2.1=h90cbb55_3
+  - munkres=1.1.4=pyh9f0ad1d_0
+  - ncurses=6.5=he02047a_1
+  - numpy=1.21.6=py310h45f3432_0
+  - openjpeg=2.5.2=h488ebb8_0
+  - openssl=3.4.0=hb9d3cd8_0
+  - packaging=24.1=pyhd8ed1ab_0
+  - pango=1.54.0=h84a9a3c_0
+  - parso=0.8.4=pyhd8ed1ab_0
+  - pcre=8.45=h9c3ff4c_0
+  - pcre2=10.44=hba22ea6_2
+  - pexpect=4.9.0=pyhd8ed1ab_0
+  - pickleshare=0.7.5=py_1003
+  - pillow=11.0.0=py310hfeaa1f3_0
+  - pip=24.3.1=pyh8b19718_0
+  - pixman=0.43.2=h59595ed_0
+  - popt=1.16=h0b475e3_2002
+  - prompt-toolkit=3.0.48=pyha770c72_0
+  - pthread-stubs=0.4=hb9d3cd8_1002
+  - ptyprocess=0.7.0=pyhd3deb0d_0
+  - pure_eval=0.2.3=pyhd8ed1ab_0
+  - pygments=2.18.0=pyhd8ed1ab_0
+  - pyparsing=3.2.0=pyhd8ed1ab_1
+  - python=3.10.15=h4a871b0_2_cpython
+  - python-dateutil=2.9.0=pyhd8ed1ab_0
+  - python_abi=3.10=5_cp310
+  - pyyaml=6.0.2=py310ha75aee5_1
+  - rapidjson=1.1.0.post20240409=hac33072_1
+  - readline=8.2=h8228510_1
+  - rhash=1.4.5=hb9d3cd8_0
+  - rsync=3.3.0=he6cb5fe_0
+  - setuptools=75.3.0=pyhd8ed1ab_0
+  - six=1.16.0=pyh6c4a22f_0
+  - sqlite=3.47.0=h9eae976_1
+  - stack_data=0.6.2=pyhd8ed1ab_0
+  - sysroot_linux-64=2.17=h4a8ded7_18
+  - texlive-core=20230313=h14aa9ea_12
+  - tinyxml2=10.0.0=h59595ed_0
+  - tk=8.6.13=noxft_h4845f30_101
+  - traitlets=5.14.3=pyhd8ed1ab_0
+  - typing_extensions=4.12.2=pyha770c72_0
+  - tzdata=2024b=hc8b5060_0
+  - unicodedata2=15.1.0=py310ha75aee5_1
+  - wayland=1.23.1=h3e06ad9_0
+  - wcwidth=0.2.13=pyhd8ed1ab_0
+  - wheel=0.45.0=pyhd8ed1ab_0
+  - wxpython=4.2.1=py310h76e45a6_7
+  - wxwidgets=3.2.5=h400ed56_1
+  - xkeyboard-config=2.43=hb9d3cd8_0
+  - xorg-libice=1.1.1=hb9d3cd8_1
+  - xorg-libsm=1.2.4=he73a12e_1
+  - xorg-libx11=1.8.10=h4f16b4b_0
+  - xorg-libxau=1.0.11=hb9d3cd8_1
+  - xorg-libxcomposite=0.4.6=hb9d3cd8_2
+  - xorg-libxcursor=1.2.3=hb9d3cd8_0
+  - xorg-libxdamage=1.1.6=hb9d3cd8_0
+  - xorg-libxdmcp=1.1.5=hb9d3cd8_0
+  - xorg-libxext=1.3.6=hb9d3cd8_0
+  - xorg-libxfixes=6.0.1=hb9d3cd8_0
+  - xorg-libxi=1.8.2=hb9d3cd8_0
+  - xorg-libxinerama=1.1.5=h5888daf_1
+  - xorg-libxrandr=1.5.4=hb9d3cd8_0
+  - xorg-libxrender=0.9.11=hb9d3cd8_1
+  - xorg-libxtst=1.2.5=hb9d3cd8_3
+  - xorg-libxxf86vm=1.1.5=hb9d3cd8_4
+  - xorg-xorgproto=2024.1=hb9d3cd8_1
+  - xxhash=0.8.2=hd590300_0
+  - xz=5.2.6=h166bdaf_0
+  - yaml=0.2.5=h7f98852_2
+  - yaml-cpp=0.8.0=h59595ed_0
+  - zlib=1.3.1=hb9d3cd8_2
+  - zstd=1.5.6=ha6fb4c9_0
diff --git a/conda/environment_from_history.yml b/conda/environment_from_history.yml