v1.0.5

fixed a bug, on load_argos.R

v1.0.4

Fix issue #36

v1.0.3 - Balto

Fix of issue #27

What's Changed

• Fixes to glossary and typos by @soccin in #23
• More fixes for oncoKb by @soccin in #25
• Update glossary.csv by @svural in #26
• SYNC with master 2023-05-25 by @soccin in #28
• Fixed issue #27: Copy number alterations count in summary by @soccin in #30
• Release 1.0.3 - bug fix for issue #27 by @soccin in #31

Full Changelog: v1.0.2...v1.0.3

v1.0.2 - Balto

OncoKb symbols now correct

What's Changed

• Update glossary.csv by @svural in #22
• Update load_data.R by @svural in #21
• Update create_tables.R by @svural in #24

Full Changelog: v1.0.1...v1.0.2

v1.0.1

Argos Report Version 1

What's Changed

• Update methods.md by @svural in #19
• Release 1.0.1 by @soccin in #20

Full Changelog: v0.9.9...v1.0.1

v0.9.8

Release Candidate 1

Full Changelog: v0.9.7...v0.9.8

v0.9.6

Added README.md with some basic usage and documentation.

Full Changelog: v0.9.5...v0.9.6

v0.9.5

Added report table with version and input info. Added ExAC filter for unmatched samples. Use MAF to get sample pairing info.

Full Changelog: v0.9.1...v0.9.5

v0.9.1

Accepted pull request and refactored the load_data code to now be a function that is called rather than R-code that sets global variables. To load the tables now do:

source("load_data.R")
dat=load_data(params$argosDir,params$sampleID)

and now the tables are bundled in a list returned by the function. The list contains:

list(
        summaryTbl=summaryTbl,
        tbl01=tbl01,
        mafTbl=mafTbl,
        cnvTbl=cnvTbl,
        cnvTblFull=cnvTblFull,
        fusionTbl=fusionTbl
    )

Also have added the fusion table and the summary table is no longer dummy text but has actual values.

What's Changed

• Update load_argos.R by @svural in #1

New Contributors

• @svural made their first contribution in #1

Full Changelog: v0.1.1...v0.9.1

v0.1.1 - Genesis

Refactored to minimal load_data script

Full Changelog: https://github.com/soccin/Goliath/commits/v0.1.1