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1. ProteoformSuite ProteoformSuite Public

   Construction, quantification, and visualization of proteoform families

   C# 12 19

2. MetaMorpheus MetaMorpheus Public

   Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities

   C# 90 46

3. mzLib mzLib Public

   Library for mass spectrometry projects

   C# 26 33

4. FlashLFQ FlashLFQ Public

   Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics

   C# 19 14

5. Spritz Spritz Public

   Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data

   C# 7 11

6. MetaDrive MetaDrive Public

   C# 2