Update pyarrow dependency (#182)

single-cell-data · Nov 21, 2023 · 7a922b0 · 7a922b0
1 parent 7777ac7
commit 7a922b0
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Showing 7 changed files with 14 additions and 1 deletion.
diff --git a/pyproject.toml b/pyproject.toml
@@ -17,6 +17,9 @@ dependencies = [
   "numpy>=1.21",
   "pandas",
   "pyarrow",
+  # TODO: once we no longer support Python 3.7, remove this and pin to pyarrow >= 14.0.1
+  # https://github.com/single-cell-data/TileDB-SOMA/issues/1926
+  "pyarrow-hotfix",
   "scipy",
   "typing-extensions>=4.1", # For LiteralString
 ]
@@ -56,5 +59,5 @@ warn_redundant_casts = true
 
 [[tool.mypy.overrides]]
 # These dependencies do not currently have canonical type stubs.
-module = ["anndata", "numba", "pandas", "pyarrow", "scipy"]
+module = ["anndata", "numba", "pandas", "pyarrow", "pyarrow_hotfix", "scipy"]
 ignore_missing_imports = true
diff --git a/python-spec/requirements-py3.10.txt b/python-spec/requirements-py3.10.txt
@@ -8,6 +8,7 @@ numpy==1.25.2
 packaging==23.1
 pandas==2.1.1
 pyarrow==13.0.0
+pyarrow_hotfix==0.6.0
 python-dateutil==2.8.2
 pytz==2023.3.post1
 scipy==1.11.3

diff --git a/python-spec/requirements-py3.7.txt b/python-spec/requirements-py3.7.txt
@@ -9,6 +9,7 @@ numpy==1.21.6
 packaging==23.1
 pandas==1.3.5
 pyarrow==12.0.1
+pyarrow_hotfix==0.6.0
 python-dateutil==2.8.2
 pytz==2023.3.post1
 scipy==1.7.3

diff --git a/python-spec/requirements-py3.8-lint.txt b/python-spec/requirements-py3.8-lint.txt
@@ -22,6 +22,7 @@ pathspec==0.11.2
 platformdirs==3.10.0
 pre-commit==3.4.0
 pyarrow==13.0.0
+pyarrow_hotfix==0.6.0
 python-dateutil==2.8.2
 pytz==2023.3.post1
 PyYAML==6.0.1

diff --git a/python-spec/requirements-py3.8.txt b/python-spec/requirements-py3.8.txt
@@ -9,6 +9,7 @@ numpy==1.24.4
 packaging==23.1
 pandas==2.0.3
 pyarrow==13.0.0
+pyarrow_hotfix==0.6.0
 python-dateutil==2.8.2
 pytz==2023.3.post1
 scipy==1.10.1

diff --git a/python-spec/requirements-py3.9.txt b/python-spec/requirements-py3.9.txt
@@ -10,6 +10,7 @@ numpy==1.25.2
 packaging==23.1
 pandas==2.1.1
 pyarrow==13.0.0
+pyarrow_hotfix==0.6.0
 python-dateutil==2.8.2
 pytz==2023.3.post1
 rsa==4.7.2

diff --git a/python-spec/src/somacore/__init__.py b/python-spec/src/somacore/__init__.py
@@ -9,6 +9,11 @@
 
 from typing import Tuple, Union
 
+# TODO: once we no longer support Python 3.7, remove this and pin to pyarrow >= 14.0.1
+# https://github.com/single-cell-data/TileDB-SOMA/issues/1926
+# ruff: noqa
+import pyarrow_hotfix
+
 from .base import SOMAObject
 from .collection import Collection
 from .data import DataFrame