testing with a few initial oma sparql querries #3
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@JervenBolleman , how should I include namespace prefixes that are unique to OMA? should they go directly into the query? I've seen there is also a prefixes.ttl file in the root directory, and some tools define a prefixes.ttl file in the sub-directory as well. what's the best way in your view? |
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Hi @alpae , Prefixes should not be in the queries but in a project specific prefixes.ttl. If they are common enough they should go to the top level prefixes. |
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thanks. ok, will give it a try and ping you once I think it's ready for merge. |
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Hi @JervenBolleman , I think I added all the existing and a few new example queries to the repo. Would be happy if you could merge if you think things are ok |
| prefix sh: <http://www.w3.org/ns/shacl#> | ||
| prefix rdfs:<http://www.w3.org/2000/01/rdf-schema#> | ||
| prefix schema:<https://schema.org/> | ||
| ex:1 |
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you don't have to use numbers. You can name them e.g. ex:rat-proteins.
oma/02-all-species.ttl
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| prefix sh: <http://www.w3.org/ns/shacl#> | ||
| prefix rdfs:<http://www.w3.org/2000/01/rdf-schema#> | ||
| prefix schema:<https://schema.org/> | ||
| ex:1 |
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This ex:1 must be different and unique for all files.
| ex:1 | ||
| a sh:SPARQLSelectExecutable, sh:SPARQLExecutable ; | ||
| sh:prefixes _:sparql_examples_prefixes ; | ||
| schema:target <https://sparql.omabrowser.org/sparql/> ; |
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this can also work on the uniprot sparql endpoint and the bgee one. you can add <https://sparql.uniprot.org/sparql/> , <https://www.bgee.org/sparql/> as extra targets.
starting to add the oma sparql examples to this repo. for now only seeking feedback if this is the intended way to integrate them.