Add CITATION.cff file

CITATION.cff

@@ -0,0 +1,65 @@
+cff-version: 1.2.0
+message: "If you use this software, please cite it as below."
+title: "A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications"
+repository-code: https://github.com/sib-swiss/sparql-examples-utils
+date-released: 2024-10-08
+doi: 10.48550/arXiv.2410.06010
+license: MIT
+authors:
+  - given-names: Jerven
+    family-names: Bolleman
+    orcid: https://orcid.org/0000-0002-7449-1266,
+    email: [email protected]
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Vincent
+    family-names: Emonet
+    orcid: https://orcid.org/0000-0002-1501-1082
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Adrian
+    family-names: Altenhoff
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Amos
+    family-names: Bairoch
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Marie-Claude
+    family-names: Blatter
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Alan
+    family-names: Bridge
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Severine
+    family-names: Duvaud
+    orcid: https://orcid.org/0000-0001-7892-9678
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Elisabeth
+    family-names: Gasteiger
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Dmitry
+    family-names: Kuznetsov
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Sebastien
+    family-names: Moretti
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Pierre-Andre
+    family-names: Michel
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Anne
+    family-names: Morgat
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Marco
+    family-names: Pagni
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Nicole
+    family-names: Redaschi
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Monique
+    family-names: Zahn-Zabal
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Tarcisio
+    family-names: Mendes de Farias
+    orcid: https://orcid.org/0000-0002-3175-5372
+    affiliation: SIB Swiss Institute of Bioinformatics
+  - given-names: Ana Claudia
+    family-names: Sima
+    orcid: https://orcid.org/0000-0003-3213-4495
+    affiliation: SIB Swiss Institute of Bioinformatics

README.md

@@ -1,6 +1,6 @@
 # SPARQL examples
 
-This is a collection of SPARQL examples usable on different SIB related SPARQL endpoints or datasets. The examples are stored one query per file in project specific repositories in the [examples](https://github.com/sib-swiss/sparql-examples/tree/master/examples) folder. 
+This is a collection of SPARQL examples usable on different SIB related SPARQL endpoints or datasets. The examples are stored one query per file in project specific repositories in the [examples](https://github.com/sib-swiss/sparql-examples/tree/master/examples) folder.
 
 Each SPARQL query is itself in a turtle file. We use the following ontologies for the basic concepts.
 
@@ -19,7 +19,7 @@ The following illustrates an example to retrieve retrieve human enzymes that met
 @prefix spex:<https://purl.expasy.org/sparql-examples/ontology#> .
 
 ex:040 # <!-- UniProt, Rhea and Swiss-Lipids are numbered but this can be anything.
-	a sh:SPARQLExecutable, sh:SPARQLSelectExecutable ; 
+	a sh:SPARQLExecutable, sh:SPARQLSelectExecutable ;
     rdfs:comment "Retrieve human enzymes that metabolize sphingolipids and are annotated in ChEMBL"@en ;
     sh:prefixes _:sparql_examples_prefixes ; # <!-- required for the import of the prefix declarations. Note the blank node
     sh:select """PREFIX CHEBI: <http://purl.obolibrary.org/obo/CHEBI_>
@@ -128,18 +128,19 @@ java -jar sparql-examples-utils.jar convert -i examples/ -p all -f ttl > example
 sparql --data examples_all.ttl "SELECT ?query (GROUP_CONCAT(?target ; separator=', ') AS ?targets) WHERE { ?query <https://schema.org/target> ?target } GROUP BY ?query HAVING (COUNT(DISTINCT ?target) > 1) "
 ```
 
-# How to cite this work
+## How to cite this work
 
-If you reuse any part of this work, please cite [the Arxiv paper](http://arxiv.org/abs/2410.06010):
+If you reuse any part of this work, please cite [the arXiv paper](http://arxiv.org/abs/2410.06010):
 
 ```
 @misc{largecollectionsparqlquestionquery,
-      title={A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications}, 
+      title={A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications},
       author={Jerven Bolleman and Vincent Emonet and Adrian Altenhoff and Amos Bairoch and Marie-Claude Blatter and Alan Bridge and Severine Duvaud and Elisabeth Gasteiger and Dmitry Kuznetsov and Sebastien Moretti and Pierre-Andre Michel and Anne Morgat and Marco Pagni and Nicole Redaschi and Monique Zahn-Zabal and Tarcisio Mendes de Farias and Ana Claudia Sima},
       year={2024},
+      doi={10.48550/arXiv.2410.06010},
       eprint={2410.06010},
       archivePrefix={arXiv},
       primaryClass={cs.DB},
-      url={https://arxiv.org/abs/2410.06010}, 
+      url={https://arxiv.org/abs/2410.06010},
 }
 ```