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update presentations for monday
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arl94 committed May 26, 2024
1 parent 8887764 commit f8820cb
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Showing 4 changed files with 36 additions and 4 deletions.
Binary file added ipynb/03_cellranger.pdf
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Binary file added ipynb/04_scanpy_workflow.pdf
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22 changes: 19 additions & 3 deletions ipynb/day1-1_cellranger.ipynb
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" text-decoration: none;\n",
" }\n",
"</style>\n",
"<a href=\"../assets/pdf/01_introduction.pdf\" target=\"_blank\" class=\"large-link\">Presentation: General introduction</a>"
"<a href=\"../assets/pdf/01_introduction.pdf\" target=\"_blank\" class=\"large-link\">Download Presentation: General introduction</a>"
]
},
{
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" text-decoration: none;\n",
" }\n",
"</style>\n",
"<a href=\"../assets/pdf/02_introduction_scRNAseq.pdf\" target=\"_blank\" class=\"large-link\">Presentation: Introduction to scRNA-seq</a>"
"<a href=\"../assets/pdf/02_introduction_scRNAseq.pdf\" target=\"_blank\" class=\"large-link\">Download Presentation: Introduction to scRNA-seq</a>"
]
},
{
"cell_type": "markdown",
"id": "65f18bc2-5ab2-4961-a8c5-8128963ecc2e",
"metadata": {},
"source": [
"<style>\n",
" .large-link {\n",
" font-size: 30px;\n",
" font-family: Arial, sans-serif;\n",
" color: #333;\n",
" text-decoration: none;\n",
" }\n",
"</style>\n",
"<a href=\"../assets/pdf/03_cellranger.pdf\" target=\"_blank\" class=\"large-link\">Download Presentation: Introduction to Cell Ranger</a>"
]
},
{
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.13"
"version": "3.11.5"
}
},
"nbformat": 4,
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18 changes: 17 additions & 1 deletion ipynb/day1-2_analysis_tools_qc.ipynb
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"# Analysis tools and quality control (QC)"
]
},
{
"cell_type": "markdown",
"id": "e121d63c-7ae9-43e4-9ff8-be784f82be4a",
"metadata": {},
"source": [
"<style>\n",
" .large-link {\n",
" font-size: 30px;\n",
" font-family: Arial, sans-serif;\n",
" color: #333;\n",
" text-decoration: none;\n",
" }\n",
"</style>\n",
"<a href=\"../assets/pdf/04_scanpy_workflow.pdf\" target=\"_blank\" class=\"large-link\">Download Presentation: Introduction to scanpy</a>"
]
},
{
"cell_type": "markdown",
"id": "fbb52fa0-2e18-4572-a2c8-ad97cd71bdc8",
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.13"
"version": "3.11.5"
}
},
"nbformat": 4,
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