Merge branch 'main' of https://github.com/sib-swiss/single-cell-pytho…

…n-training into main
sib-swiss · May 21, 2024 · 0b0c544 · 0b0c544
2 parents b77c567 + 9fd1f33
commit 0b0c544
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diff --git a/_quarto.yml b/_quarto.yml
@@ -20,8 +20,8 @@ website:
       - href: course_schedule.qmd
       - text: "day 1"
         menu:
-          - href: "ipynb/day1-1_setup.md"
-          - href: "ipynb/day1-1a_cellranger.md"
+          - href: "ipynb/day1-1_setup.ipynb"
+          - href: "ipynb/day1-1a_cellranger.ipynb"
           - href: "ipynb/day1-2_analysis_tools_qc.ipynb"
           - href: "ipynb/day1-3_normalization_scaling.ipynb"
       - text: "day 2"

diff --git a/course_schedule.qmd b/course_schedule.qmd
@@ -15,7 +15,7 @@ title: "Course schedule"
 |         	| 10:15 AM 	| 10:45 AM 	| BREAK                          	|
 | block 2 	| 10:45 AM 	| 12:00 PM 	| Presentation: Andreia Gouvêa, 10X Field Application Scientist 	     |
 |         	| 12:00 PM 	| 1:00 PM  	| BREAK                          	|
-| block 3 	| 1:00 PM  	| 3:00 PM  	| [Cell Ranger](iypnb/day1-1a_cellranger.iypnb) and [Quality Control](ipynb/day1-2_analysis_tools_qc.ipynb)             	 |
+| block 3 	| 1:00 PM  	| 3:00 PM  	| [Cell Ranger](iypnb/day1-1a_cellranger.ipynb) and [Quality Control](ipynb/day1-2_analysis_tools_qc.ipynb)             	 |
 |         	| 3:00 PM  	| 3:30 PM  	| BREAK                          	|
 | block 4 	| 3:30 PM  	| 5:00 PM  	| [Normalization and Scaling](ipynb/day1-3_normalization_scaling.ipynb)