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fixes typo in snippet
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Geert van Geest committed Sep 27, 2022
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2 changes: 1 addition & 1 deletion docs/day2/filtering_evaluation.md
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Expand Up @@ -24,7 +24,7 @@ Our dataset is too small to apply VQSR. We will therefore do hard filtering inst
First, filtering thresholds are usually different for SNPs and INDELs. Therefore, we will split `trio.vcf` into two vcfs, one containg only SNPs, and one containing only INDELs. You can extract all the SNP records in our trio vcf like this:

```sh
cd ~/workdir
cd ~/workdir/results

gatk SelectVariants \
--variant variants/trio.vcf \
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