Skip to content

Issues: scverse/anndata

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

194 Open 548 Closed
194 Open 548 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Crash on read of backed-mode X with scipy==1.15.0rc1 Bug 🐛 Triage 🩺
#1802 opened Dec 15, 2024 by johnkerl
2 of 3 tasks
Broken pytest with 8.3.4 only on Azure Bug 🐛
#1787 opened Dec 3, 2024 by ilan-gold
2
anndata initializer does not verify indices match on layers Bug 🐛
#1769 opened Nov 16, 2024 by amcpherson
3 tasks done
6
Implementation of fireducks pandas
#1803 opened Nov 11, 2024 by KarlKaise
1
Add support for sparse arrays (pydata) to .varp and .obsp fields enhancement type: sparse 🫥
#1731 opened Oct 22, 2024 by jkobject
5
Refactor ad.concat enhancement topic: api
#1715 opened Oct 16, 2024 by ilan-gold
@ilan-gold
.experimental.concat_on_disk fails to properly infer indptr dtype for the final object Bug 🐛 stale
#1709 opened Oct 10, 2024 by jacobkimmel
3 tasks done
@ilan-gold
4
IO support for pandas datetime format enhancement topic: io type: dataframe 🧮
#1708 opened Oct 9, 2024 by le-ander
2 of 3 tasks
@ilan-gold
1
Allow dispatched write_elem without clearing Zarr store root enhancement
#1704 opened Oct 2, 2024 by keller-mark
1
Add official testing.anndata API enhancement testing topic: api
#1699 opened Sep 26, 2024 by flying-sheep
3 tasks
0.12.0
@flying-sheep
support gene panel selection/adaptation enhancement
#1697 opened Sep 26, 2024 by mojtababahrami 0.12.0
1
0.11: add doc redirects stale
#1695 opened Sep 24, 2024 by flying-sheep
1
Writing dict in uns with many keys is slow performance 🐌
#1684 opened Sep 21, 2024 by grst
2 of 3 tasks
0.12.0
@ilan-gold
2
remove deprecated anndata.read enhancement topic: io
#1683 opened Sep 20, 2024 by ilan-gold 0.12.0
1
@ilan-gold
2
Duplicates in index throw error during make_index_unique Bug 🐛 Needs info❔ stale
#1670 opened Sep 11, 2024 by lesolorzanov
2
Transition to backed mode fails with .raw specified Bug 🐛 stale Triage 🩺
#1666 opened Sep 5, 2024 by colganwi
2 of 3 tasks
@ilan-gold
1
(feat): full release automation enhancement
#1655 opened Sep 4, 2024 by ilan-gold
@ilan-gold
(chore): clean up use of spmatrix and sparray enhancement
#1649 opened Sep 4, 2024 by ilan-gold 0.12.0
1
@ilan-gold
Trigger CI Jobs in other Core Repos enhancement
#1628 opened Aug 29, 2024 by ilan-gold
2
Writing a h5py.Dataset loads the whole thing into memory Bug 🐛 performance 🐌 stale
#1623 opened Aug 28, 2024 by ivirshup
3 tasks done
1
@ivirshup
2
Adding multiple "visits" (clinical data) to a single .obs stale
#1617 opened Aug 28, 2024 by Rafael-Silva-Oliveira
1
Add parameter for more resilient concat_on_disk enhancement topic: api topic: combining topic: io
#1602 opened Aug 21, 2024 by DingWB
3 tasks done
4
backed="r" is leaking memory Bug 🐛 Needs info❔ stale
#1597 opened Aug 14, 2024 by agemagician
2 of 3 tasks
@ilan-gold
2
Policy for format updates enhancement topic: api topic: io
#1577 opened Aug 8, 2024 by ivirshup 0.12.0
@ivirshup
1
TypeError when writing string columns to h5ad Bug 🐛 stale
#1571 opened Jul 31, 2024 by mtvector
3 tasks done
@ilan-gold
2
ProTip! Adding no:label will show everything without a label.