06 Jul 12:57

169a4a3

v2.1.0 Latest

Latest

This release modernizes a lot of kepler-mapper. We've dropped python 3.6 and 3.7 support, added support through python 3.12, updated the build process, github actions, and the read the docs build. There were lingering changes on master that never made it to pypi because of the broken release actions. The full list of updates is available below.

What's Changed

Fix docs build by @deargle in #235
Update code to new cover api by @erooke in #229
Fix docs notebooks by @deargle in #237
Fix divide-by-zero, deprecation, and futurewarnings by @erooke in #236
Test cubes overlap cleaned up by @erooke in #232
add ability to d3 vis to live-update min-intersection requirement by @deargle in #231
fix missing links in docs 'applications' page by @deargle in #241
refactor docs tocs and index page by @deargle in #239
New html vis tutorial (blocked by #239) by @deargle in #240
Update docs build by @catanzaromj in #253
Switch python-igraph to igraph by @catanzaromj in #260
Bump version, remove unnec imports, update release by @catanzaromj in #261

New Contributors

@erooke made their first contribution in #229
@catanzaromj made their first contribution in #253
Thanks to @wingenium-nagesh, @blue-j, and @ulriks9 for catching a numpy bug.

Full Changelog: v2.0.1...v2.1.0

Contributors

deargle, blue-j, and 4 other contributors

Assets 2

12 May 21:13

deargle

v2.0.1

7dc4d0a

fix plotlyviz colors; fix agglomerative clustering; change searchbar default

2.0.1

Fixed

min_cluster_samples now only accepts an int -- now AgglomerativeClustering works (#224)
plotlyviz.scomplex_to_graph no longer casts color_values to a 2d array, and visuals._tooltip_components now generates
either 1d or 2d member_histogram depending on dimensionality of color_values (#225)

Fixed/Changed

The AND and OR searchbar queries no longer multiplies the base size of a node by the ratio of how many of its items match. Rather,
the base size of the node is simply multiplied by how many of its items match the query. With this change, the size of a node
during an AND or OR search query again directly reflects the number of items within the node. (#227)
The default search mode is now AND -- because that's the expected behavior, because that's how the google works (#227)

Assets 2

15 Mar 15:38

sauln

v2.0.0

56dbd66

Brand new visualizations with color picker!

Visualization

All of the below changes apply to kmapper's D3 html visualization.

added searchbar functionality (see documentation for include_searchbar in kmapper.visualize())
upgraded d3 from v3 to v6 -- one huge benefit of the new d3-force library is that it is [deterministic](https:// twitter.com/mbostock/status/725124754701717504?lang=en), so a given graph will always render the same visually, across browsers and reloads.
clicking on a node will set it as the "focus node" (the node for which details are shown in the details pane). until the user clicks off of the node. That is to say, click-focus is not lost if another node is moused-over. Click-focus is released if (1) another node is clicked on, or (2) if the user clicks on the blank canvas.
hovering over a node will "freeze" it in place until no longer hovering over that node. This makes it easier to grab the node. If no node is currently set as the "focus node" via a click, then hovering over a node will also make it the focus node.
once a node is dragged, it stays ("freezes") where it was dragged
added the ability to freeze (and unfreeze) all nodes with keystrokes f and x,
the focus node visually "pulses" in the display
added the ability to "save" the positioning of all nodes in the display. Saves to a .json file. Node positioning can be re-loaded via providing the json save file.
multiple color_values arrays can be passed, and switched between interactively in the display.
the node color function can be specified, as a string, to any function available on the numpy base class (e.g., 'mean', 'median', 'max', 'min'. (Before, the only available function was np.mean.
- Multiple node color functions can be specified, and toggled between interactively in the display.
The toolbar display now uses css flexbox, which avoids overlap-problems on smaller viewports.