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# Sphinx build info version 1
# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 03c30f62132b7f5142b693671e0b9efa
config: 0a7e7baaa73ccd7e0ca093fcef668f4c
tags: 645f666f9bcd5a90fca523b33c5a78b7
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Expand Up @@ -351,7 +351,7 @@ will not work either.
interactive(children=(IntSlider(value=34, description='plane', max=59), Output()), _dom_classes=('widget-interact',))

<function explore_slices.<locals>.display_slice at 0x7fbbcf895260>
<function explore_slices.<locals>.display_slice at 0x7fda02ead8a0>



Expand Down Expand Up @@ -473,7 +473,7 @@ slices interactively.
interactive(children=(IntSlider(value=34, description='plane', max=59), Output()), _dom_classes=('widget-interact',))

<function explore_slices.<locals>.display_slice at 0x7fbbcff7dee0>
<function explore_slices.<locals>.display_slice at 0x7fda00514d60>



Expand Down Expand Up @@ -584,7 +584,7 @@ Note that this works in a static HTML page!

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 10.426 seconds)
**Total running time of the script:** (0 minutes 10.402 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_image_processing.py:
Expand All @@ -596,7 +596,7 @@ Note that this works in a static HTML page!
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_3d_image_processing.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_3d_image_processing.ipynb
:alt: Launch binder
:width: 150 px

Expand Down
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Expand Up @@ -148,7 +148,7 @@ The `imshow` function can display both grayscale and RGB(A) 2D images.
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers). Got range [64..4095].
<matplotlib.image.AxesImage object at 0x7fbbcc735160>
<matplotlib.image.AxesImage object at 0x7fca43d8d430>
Expand Down Expand Up @@ -322,9 +322,6 @@ Click the play button to move along the ``z`` axis, through the stack of all
.. raw:: html
:file: images/sphx_glr_plot_3d_interaction_005.html

Expand All @@ -351,9 +348,6 @@ Combine channel facetting and slice animation
.. raw:: html
:file: images/sphx_glr_plot_3d_interaction_006.html

Expand Down Expand Up @@ -381,7 +375,7 @@ The biologist's eye can spot that the two bright blobs (best seen in
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 10.806 seconds)
**Total running time of the script:** (0 minutes 11.236 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_interaction.py:
Expand All @@ -393,7 +387,7 @@ The biologist's eye can spot that the two bright blobs (best seen in
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_3d_interaction.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_3d_interaction.ipynb
:alt: Launch binder
:width: 150 px

Expand Down
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Expand Up @@ -348,6 +348,9 @@ where the maximum eigenvalue is found (i.e., ``Z = coords[1]``).
.. raw:: html
:file: images/sphx_glr_plot_3d_structure_tensor_004.html




Expand Down Expand Up @@ -457,7 +460,7 @@ maximum eigenvalue is found.
.. raw:: html
:file: images/sphx_glr_plot_3d_structure_tensor_004.html
:file: images/sphx_glr_plot_3d_structure_tensor_005.html



Expand Down Expand Up @@ -487,7 +490,7 @@ tissue), especially in the Y-Z plane (``longitudinal=1``).
.. raw:: html
:file: images/sphx_glr_plot_3d_structure_tensor_005.html
:file: images/sphx_glr_plot_3d_structure_tensor_006.html



Expand Down Expand Up @@ -521,7 +524,7 @@ we would get the pancake situation.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 4.240 seconds)
**Total running time of the script:** (0 minutes 4.053 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_structure_tensor.py:
Expand All @@ -533,7 +536,7 @@ we would get the pancake situation.
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_3d_structure_tensor.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_3d_structure_tensor.ipynb
:alt: Launch binder
:width: 150 px

Expand Down
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Expand Up @@ -342,7 +342,7 @@ labeled individually.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 1.946 seconds)
**Total running time of the script:** (0 minutes 2.091 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_coins_segmentation.py:
Expand All @@ -354,7 +354,7 @@ labeled individually.
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_coins_segmentation.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_coins_segmentation.ipynb
:alt: Launch binder
:width: 150 px

Expand Down
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Expand Up @@ -177,7 +177,7 @@ much lower than the overlap coefficient.
.. code-block:: none
np.float64(0.1799733444801378)
np.float64(0.29526952519278543)
Expand Down Expand Up @@ -281,7 +281,7 @@ would give us a good measure of how strong the association is.

.. code-block:: none
PCC: 0.771, p-val: 0
PCC: 0.79, p-val: 0
Expand Down Expand Up @@ -309,7 +309,7 @@ case.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 1.543 seconds)
**Total running time of the script:** (0 minutes 1.826 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_colocalization_metrics.py:
Expand All @@ -321,7 +321,7 @@ case.
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_colocalization_metrics.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_colocalization_metrics.ipynb
:alt: Launch binder
:width: 150 px

Expand Down
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Expand Up @@ -495,7 +495,7 @@ the opening processing step, when removing fine-grained features.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 29.384 seconds)
**Total running time of the script:** (0 minutes 29.328 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_cornea_spot_inpainting.py:
Expand All @@ -507,7 +507,7 @@ the opening processing step, when removing fine-grained features.
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_cornea_spot_inpainting.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_cornea_spot_inpainting.ipynb
:alt: Launch binder
:width: 150 px

Expand Down
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Expand Up @@ -134,7 +134,7 @@ using `OpenCV train cascade utility
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 0.483 seconds)
**Total running time of the script:** (0 minutes 0.455 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_face_detection.py:
Expand All @@ -146,7 +146,7 @@ using `OpenCV train cascade utility
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_face_detection.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_face_detection.ipynb
:alt: Launch binder
:width: 150 px

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Expand Up @@ -615,7 +615,7 @@ time points, and then becomes roughly constant.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.432 seconds)
**Total running time of the script:** (0 minutes 2.778 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_fluorescence_nuclear_envelope.py:
Expand All @@ -627,7 +627,7 @@ time points, and then becomes roughly constant.
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_fluorescence_nuclear_envelope.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_fluorescence_nuclear_envelope.ipynb
:alt: Launch binder
:width: 150 px

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Expand Up @@ -282,15 +282,15 @@ Once the features are extracted, we can train and test a new classifier.

.. code-block:: none
Computing the full feature set took 27.649s, plus 2.732s training, for an AUC of 1.00. Computing the restricted feature set took 0.147s, plus 2.299s training, for an AUC of 1.00.
Computing the full feature set took 28.658s, plus 2.934s training, for an AUC of 1.00. Computing the restricted feature set took 0.164s, plus 2.372s training, for an AUC of 1.00.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 36.096 seconds)
**Total running time of the script:** (0 minutes 37.763 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_haar_extraction_selection_classification.py:
Expand All @@ -302,7 +302,7 @@ Once the features are extracted, we can train and test a new classifier.
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_haar_extraction_selection_classification.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_haar_extraction_selection_classification.ipynb
:alt: Launch binder
:width: 150 px

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19 changes: 11 additions & 8 deletions dev/_sources/auto_examples/applications/plot_human_mitosis.rst.txt
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Expand Up @@ -186,6 +186,9 @@ resort to :ref:`sphx_glr_auto_examples_segmentation_plot_multiotsu.py`.
:srcset: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_003.png
:class: sphx-glr-single-img

.. raw:: html
:file: images/sphx_glr_plot_human_mitosis_004.html




Expand Down Expand Up @@ -294,9 +297,9 @@ is underestimated.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_004.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_005.png
:alt: Original, Dividing nuclei?, All nuclei?
:srcset: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_004.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_005.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -345,9 +348,9 @@ by dichotomy, visually and manually.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_005.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_006.png
:alt: Dividing nuclei
:srcset: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_005.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_006.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -442,9 +445,9 @@ label with argument `bg_label=0`.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_006.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_007.png
:alt: Overlapping nuclei, Segmented nuclei
:srcset: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_006.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_human_mitosis_007.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -519,7 +522,7 @@ cells in this sample. Therefore, we estimate the mitotic index to be:
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.955 seconds)
**Total running time of the script:** (0 minutes 2.866 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_human_mitosis.py:
Expand All @@ -531,7 +534,7 @@ cells in this sample. Therefore, we estimate the mitotic index to be:
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_human_mitosis.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_human_mitosis.ipynb
:alt: Launch binder
:width: 150 px

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Expand Up @@ -192,7 +192,7 @@ Blend

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.643 seconds)
**Total running time of the script:** (0 minutes 2.737 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_image_comparison.py:
Expand All @@ -204,7 +204,7 @@ Blend
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_image_comparison.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_image_comparison.ipynb
:alt: Launch binder
:width: 150 px

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Expand Up @@ -70,7 +70,7 @@ functions only work on gray-scale or binary images, so we set ``as_gray=True``.
.. code-block:: none
<matplotlib.image.AxesImage object at 0x7fa72c7b6630>
<matplotlib.image.AxesImage object at 0x7fda137ea6c0>
Expand Down Expand Up @@ -464,7 +464,7 @@ Additional Resources
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.201 seconds)
**Total running time of the script:** (0 minutes 2.160 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_morphology.py:
Expand All @@ -476,7 +476,7 @@ Additional Resources
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_morphology.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_morphology.ipynb
:alt: Launch binder
:width: 150 px

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Expand Up @@ -199,7 +199,7 @@ to the position of the centroid!

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (1 minutes 18.884 seconds)
**Total running time of the script:** (1 minutes 19.919 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_pixel_graphs.py:
Expand All @@ -211,7 +211,7 @@ to the position of the centroid!
.. container:: binder-badge

.. image:: images/binder_badge_logo.svg
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.25.0rc2?filepath=notebooks/auto_examples/applications/plot_pixel_graphs.ipynb
:target: https://mybinder.org/v2/gh/scikit-image/scikit-image/main?filepath=notebooks/auto_examples/applications/plot_pixel_graphs.ipynb
:alt: Launch binder
:width: 150 px

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