feat: Add toy calculator, empirical distribution, and toy example notebook#790

Merged

kratsg merged 60 commits intomasterfrom toycalc

Oct 28, 2020

+7,205-23

Commits on Oct 28, 2020

Initial commit

lukasheinrich
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kratsg
committed
add toys notebook
kratsg
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use tqdm for progress
kratsg
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update notebook
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add docstrings
kratsg
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add missing to docstring
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allow kwargs forwarding through to calculators
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add little doc to hypotest
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restructure a little and move into infer.utils
kratsg
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Add additional \ for typsetting in Sphinx

matthewfeickert
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kratsg
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Apply revisions to notebook

matthewfeickert
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kratsg
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Add toys notebook to tests

matthewfeickert
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revert: Set bkg uncert explicitly

matthewfeickert
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kratsg
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Use figure size of (14,6) inches for Figure 5 plots

matthewfeickert
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kratsg
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Clarify calculator action description and correct typo

matthewfeickert
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kratsg
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Move matplotlib font control to notebook header

matthewfeickert
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use sig-like and bkg-like phrasing everywhere
kratsg
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Add tests for EmpiricalDistribution and ToyCalculator

matthewfeickert
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kratsg
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Use generic term 'test statistic'

matthewfeickert
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kratsg
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Update numbers of toys to 20000

matthewfeickert
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Use pytest.approx to get CI to pass

matthewfeickert
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Mark toys notebook as 'slow' test to skip

matthewfeickert
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kratsg
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Add EmpiricalDistribution, ToyCalculator, and utils.create_calculator to docs

matthewfeickert
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kratsg
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Use 10000 toys for faster result

matthewfeickert
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kratsg
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Add examples for EmpericalDist

matthewfeickert
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Correct line spacing for doctest

matthewfeickert
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Add example for generate_asimov_data

matthewfeickert
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Add examples for AsymptoticTestStatDistribution

matthewfeickert
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Add examples to AsymptoticCalculator

matthewfeickert
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kratsg
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Add ToyCalculator examples

matthewfeickert
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Add examples to infer.utils

matthewfeickert
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kratsg
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Use consistent style

matthewfeickert
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kratsg
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Specify interpolation method to use

matthewfeickert
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kratsg
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fix import
kratsg
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Apply Black

matthewfeickert
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kratsg
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Pop off the hypotest specific kwargs before passing to create_calculator

matthewfeickert
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kratsg
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Use updated test stats API

matthewfeickert
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Use correct calculator API

matthewfeickert
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Use model suggested init_pars, par_bounds, fixed_params

matthewfeickert
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kratsg
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Fix doctest

matthewfeickert
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kratsg
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Change values for qtilde_mu_bkg.samples in test_infer

matthewfeickert
authored and
kratsg
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fix up argument passing
kratsg
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qtilde False back to existing API
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move hypotest back
kratsg
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fix imports
kratsg
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fix up spacing
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actually test toys notebook
kratsg
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fix import
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fix doctest
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add test for coverage in backends
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switch to tensorlib backend
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qtilde=True default
kratsg
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Use :obj:
matthewfeickert
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Keep docstrings to 80 chars when possible
matthewfeickert
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Use pyhf.infer.test_statistics.qmu_tilde API
matthewfeickert
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Set qtilde for the two toy calculators
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Explicitly give qtilde option in example
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Add comment to relevant PR for adding percentile
matthewfeickert
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add :obj:
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remove slow
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