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@inutano
inutano committed Oct 24, 2023
1 parent 2399fe8 commit 79d2fc0
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1 change: 1 addition & 0 deletions tests/ro-crate/ro-crate_dir/cmd.txt
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docker run --rm -v /var/run/docker.sock:/var/run/docker.sock -e DOCKER_HOST=unix:///var/run/docker.sock -v /tmp:/tmp -v /home/ubuntu/git/github.com/sapporo-wes/sapporo-service/run/27/27469c13-2f6d-47af-9623-39cdee5f1a04:/home/ubuntu/git/github.com/sapporo-wes/sapporo-service/run/27/27469c13-2f6d-47af-9623-39cdee5f1a04 -w=/home/ubuntu/git/github.com/sapporo-wes/sapporo-service/run/27/27469c13-2f6d-47af-9623-39cdee5f1a04/exe quay.io/commonwl/cwltool:3.1.20220628170238 --outdir /home/ubuntu/git/github.com/sapporo-wes/sapporo-service/run/27/27469c13-2f6d-47af-9623-39cdee5f1a04/outputs https://raw.githubusercontent.com/sapporo-wes/yevis-cli/6411de7d3a823d717d61d29591f59c681e8705be/tests/CWL/wf/trimming_and_qc.cwl /home/ubuntu/git/github.com/sapporo-wes/sapporo-service/run/27/27469c13-2f6d-47af-9623-39cdee5f1a04/exe/workflow_params.json 1>/home/ubuntu/git/github.com/sapporo-wes/sapporo-service/run/27/27469c13-2f6d-47af-9623-39cdee5f1a04/stdout.log 2>/home/ubuntu/git/github.com/sapporo-wes/sapporo-service/run/27/27469c13-2f6d-47af-9623-39cdee5f1a04/stderr.log
1 change: 1 addition & 0 deletions tests/ro-crate/ro-crate_dir/end_time.txt
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2023-07-25T14:54:07
Binary file added tests/ro-crate/ro-crate_dir/exe/ERR034597_1.small.fq.gz
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10 changes: 10 additions & 0 deletions tests/ro-crate/ro-crate_dir/exe/workflow_params.json
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{
"fastq_1": {
"class": "File",
"path": "ERR034597_1.small.fq.gz"
},
"fastq_2": {
"class": "File",
"path": "ERR034597_2.small.fq.gz"
}
}
658 changes: 658 additions & 0 deletions tests/ro-crate/ro-crate_dir/executable_workflows.json
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1 change: 1 addition & 0 deletions tests/ro-crate/ro-crate_dir/exit_code.txt
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26 changes: 26 additions & 0 deletions tests/ro-crate/ro-crate_dir/outputs.json
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[
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"file_url": "http://localhost:1122/runs/27469c13-2f6d-47af-9623-39cdee5f1a04/data/outputs/ERR034597_1.small.fq.trimmed.1U.fq"
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"file_name": "ERR034597_1.small.fq.trimmed.2P.fq",
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{
"file_name": "ERR034597_1.small_fastqc.html",
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"file_name": "ERR034597_2.small_fastqc.html",
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94,556 changes: 94,556 additions & 0 deletions tests/ro-crate/ro-crate_dir/outputs/ERR034597_1.small.fq.trimmed.1P.fq
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3,424 changes: 3,424 additions & 0 deletions tests/ro-crate/ro-crate_dir/outputs/ERR034597_1.small.fq.trimmed.1U.fq
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94,556 changes: 94,556 additions & 0 deletions tests/ro-crate/ro-crate_dir/outputs/ERR034597_1.small.fq.trimmed.2P.fq
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1,468 changes: 1,468 additions & 0 deletions tests/ro-crate/ro-crate_dir/outputs/ERR034597_1.small.fq.trimmed.2U.fq
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187 changes: 187 additions & 0 deletions tests/ro-crate/ro-crate_dir/outputs/ERR034597_1.small_fastqc.html
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187 changes: 187 additions & 0 deletions tests/ro-crate/ro-crate_dir/outputs/ERR034597_2.small_fastqc.html
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252 changes: 252 additions & 0 deletions tests/ro-crate/ro-crate_dir/ro-crate-metadata.json
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Expand Up @@ -30,6 +30,30 @@
{
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},
{
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{
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},
Expand Down Expand Up @@ -95,7 +119,35 @@
"@id": "exe/trimmomatic_pe.cwl"
}
],
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}
Expand Down Expand Up @@ -161,6 +213,34 @@
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"startTime": "2023-07-25T14:53:41",
"subjectOf": [
{
Expand All @@ -172,6 +252,178 @@
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Expand Down
1 change: 1 addition & 0 deletions tests/ro-crate/ro-crate_dir/run.pid
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547
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