Merge branch 'y24-088-tuberacks-epic' into y24-486-relatives-tab

.release-version

@@ -1 +1 @@
-3.64.3
+3.66.0

README.md

@@ -284,7 +284,7 @@ FactoryBot.define do
     transient { related_thing { create :v2_tag_group_with_tags } }
 
     after(:build) do |record, factory|
-      record._cached_relationship(:related_thing) { factory.related_thing } if evaluator.related_thing
+      record._cached_relationship(:related_thing) { factory.related_thing } if factory.related_thing
     end
   end
 end

app/controllers/labware_controller.rb

@@ -90,11 +90,6 @@ def state_changer_for(purpose_uuid, labware_uuid)
   end
 
   def presenter_for(labware)
-    presenter = Presenters.lookup_for(labware).new(labware:)
-
-    # TODO: {Y24-190} - Remove this line when the API v1 is removed from Presenters::ExtendedCsv
-    presenter.api = api if presenter.respond_to?(:api=)
-
-    presenter
+    Presenters.lookup_for(labware).new(labware:)
   end
 end

app/controllers/qc_files_controller.rb

@@ -11,17 +11,20 @@ class QcFilesController < ApplicationController
   before_action :find_assets, only: %i[create index]
 
   def index
-    respond_to { |format| format.json { render json: { 'qc_files' => asset.qc_files } } }
+    respond_to { |format| format.json { render json: { 'qc_files' => asset.qc_files.map { |q| qc_file_to_json(q) } } } }
   end
 
   def show
-    response = api.qc_file.find(params[:id]).retrieve
-    filename = /filename="([^"]*)"/.match(response['Content-Disposition'])[1] || 'unnamed_file'
-    send_data(response.body, filename: filename, type: 'sequencescape/qc_file')
+    qc_file = Sequencescape::Api::V2::QcFile.find(uuid: params[:id]).first
+    send_data(qc_file.contents, filename: qc_file.filename, type: 'sequencescape/qc_file')
   end
 
   def create
-    asset.qc_files.create_from_file!(params['qc_file'], params['qc_file'].original_filename)
+    Sequencescape::Api::V2::QcFile.create_for_labware!(
+      contents: params['qc_file'].read,
+      filename: params['qc_file'].original_filename,
+      labware: asset
+    )
     redirect_to(
       asset_path,
       notice: 'Your file has been uploaded and is available from the file tab' # rubocop:todo Rails/I18nLocaleTexts
@@ -30,12 +33,16 @@ def create
 
   private
 
+  def qc_file_to_json(qc_file)
+    { filename: qc_file.filename, size: qc_file.size, uuid: qc_file.uuid, created: qc_file.created_at.to_fs(:long) }
+  end
+
   def find_assets
     %w[plate tube multiplexed_library_tube tube_rack].each do |klass|
       next if params["limber_#{klass}_id"].nil?
 
       @asset_path = send(:"limber_#{klass}_path", params["limber_#{klass}_id"])
-      @asset = api.send(:"#{klass}").find(params["limber_#{klass}_id"])
+      @asset = Sequencescape::Api::V2::Labware.find(uuid: params["limber_#{klass}_id"]).first
       return true
     end
     false

app/controllers/tube_racks/tube_racks_exports_controller.rb

@@ -0,0 +1,54 @@
+# frozen_string_literal: true
+
+require 'csv'
+
+# The exports controller handles the generation of exported files for tube racks
+class TubeRacks::TubeRacksExportsController < ApplicationController
+  include ExportsFilenameBehaviour
+  # helper ExportsHelper
+  before_action :locate_labware, only: :show
+  rescue_from Export::NotFound, with: :not_found
+
+  def show
+    @page = params.fetch(:page, 0).to_i
+    @workflow = export.workflow
+
+    # Set the filename for the export via the ExportsFilenameBehaviour concern
+    set_filename(@labware, @page) if export.filename
+
+    render export.csv
+  end
+
+  private
+
+  def export
+    @export ||= Export.find(params[:id])
+  end
+
+  def not_found
+    raise ActionController::RoutingError, "Unknown template #{params[:id]}"
+  end
+
+  def configure_api
+    # We don't use the V1 Sequencescape API here, so lets disable its initialization.
+    # Probably should consider two controller classes as this expands.
+  end
+
+  def locate_labware
+    @labware =
+      @tube_rack =
+        Sequencescape::Api::V2.tube_rack_with_custom_includes(
+          include_parameters,
+          select_parameters,
+          uuid: params[:limber_tube_rack_id]
+        )
+  end
+
+  def include_parameters
+    export.tube_rack_includes || nil
+  end
+
+  def select_parameters
+    export.tube_rack_selects || nil
+  end
+end

app/controllers/tubes/work_completions_controller.rb

@@ -8,6 +8,6 @@ class Tubes::WorkCompletionsController < ApplicationController
   before_action :check_for_current_user!
 
   def labware
-    @labware ||= api.tube.find(params[:limber_tube_id])
+    @labware ||= Sequencescape::Api::V2.tube_for_completion(params[:limber_tube_id])
   end
 end