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Merge pull request #114 from thanhleviet/fix-path
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Remove hardcoded path
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andrewjpage authored Dec 4, 2019
2 parents e355dfd + fbbb7a4 commit 5fe2d06
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Showing 5 changed files with 5 additions and 5 deletions.
2 changes: 1 addition & 1 deletion bin/add_tradis_tags
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ Checks the presence of tr/tq tags in a given BAM file

BEGIN { unshift( @INC, '../lib' ) }
BEGIN { unshift( @INC, './lib' ) }
BEGIN { unshift( @INC, '/software/pathogen/internal/prod/lib/' ) }
# BEGIN { unshift( @INC, '/software/pathogen/internal/prod/lib/' ) }
BEGIN { unshift( @INC, "$Bin/../lib/" ) }

use Bio::Tradis::CommandLine::AddTags;
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2 changes: 1 addition & 1 deletion bin/bacteria_tradis
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ site plots for use in Artemis

BEGIN { unshift( @INC, '../lib' ) }
BEGIN { unshift( @INC, './lib' ) }
BEGIN { unshift( @INC, '/software/pathogen/internal/prod/lib/' ) }
# BEGIN { unshift( @INC, '/software/pathogen/internal/prod/lib/' ) }
BEGIN { unshift( @INC, "$Bin/../lib/" ) }

use Bio::Tradis::CommandLine::TradisAnalysis;
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2 changes: 1 addition & 1 deletion bin/check_tradis_tags
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ Checks the presence of tr/tq tags in a given BAM file

BEGIN { unshift( @INC, '../lib' ) }
BEGIN { unshift( @INC, './lib' ) }
BEGIN { unshift( @INC, '/software/pathogen/internal/prod/lib/' ) }
# BEGIN { unshift( @INC, '/software/pathogen/internal/prod/lib/' ) }
BEGIN { unshift( @INC, "$Bin/../lib/" ) }

use Bio::Tradis::CommandLine::CheckTags;
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2 changes: 1 addition & 1 deletion bin/combine_tradis_plots
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ plotfile and as an identifier in the stats file, so ensure these are unique.

BEGIN { unshift( @INC, '../lib' ) }
BEGIN { unshift( @INC, './lib' ) }
BEGIN { unshift( @INC, '/software/pathogen/internal/prod/lib/' ) }
# BEGIN { unshift( @INC, '/software/pathogen/internal/prod/lib/' ) }
BEGIN { unshift( @INC, "$Bin/../lib/" ) }

use Bio::Tradis::CommandLine::PlotCombine;
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2 changes: 1 addition & 1 deletion bin/filter_tradis_tags
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ match the tag provided

BEGIN { unshift( @INC, '../lib' ) }
BEGIN { unshift( @INC, './lib' ) }
BEGIN { unshift( @INC, '/software/pathogen/internal/prod/lib/' ) }
# BEGIN { unshift( @INC, '/software/pathogen/internal/prod/lib/' ) }
BEGIN { unshift( @INC, "$Bin/../lib/" ) }

use Bio::Tradis::CommandLine::FilterFastqTags;
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