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Sep 7, 2023 in 0s
Test report (Python 3.11) ❌
❌ test-results-3.11.xml
407 tests were completed in 1640s with 345 passed, 42 failed and 20 skipped.
| Test suite | Passed | Failed | Skipped | Time |
|---|---|---|---|---|
| pytest | 345✅ | 42❌ | 20⚪ | 1640s |
❌ pytest
tests.test_base
✅ testGMG
✅ testParallelGMG[1-interval-P1-False]
✅ testParallelGMG[1-interval-P1-True]
✅ testParallelGMG[4-interval-P1-True]
✅ testParallelGMG[4-interval-P2-True]
✅ testParallelGMG[4-square-P2-True]
✅ testParallelGMG[4-square-P2-False]
✅ testParallelGMG[1-square-P2-True]
✅ testParallelGMG[1-square-P2-False]
✅ testParallelGMG[4-square-P1-True]
✅ testParallelGMG[4-square-P3-True]
✅ testParallelGMG[4-square-P3-False]
✅ testParallelGMG[1-square-P3-True]
✅ testParallelGMG[1-square-P3-False]
✅ testParallelGMG[4-interval-P3-True]
✅ testParallelGMG[4-cube-P3-True]
✅ testParallelGMG[4-cube-P3-False]
✅ testParallelGMG[1-cube-P3-True]
✅ testParallelGMG[1-cube-P3-False]
✅ testParallelGMG[4-cube-P2-True]
✅ testParallelGMG[4-cube-P2-False]
✅ testParallelGMG[1-cube-P2-True]
✅ testParallelGMG[1-cube-P2-False]
✅ testParallelGMG[4-cube-P1-True]
✅ testParallelGMG[4-cube-P1-False]
❌ testHelmholtz[4-cube]
ranks = 4, domain = 'cube', extra = []
✅ testParallelGMG[1-cube-P1-True]
✅ testParallelGMG[1-cube-P1-False]
❌ testHelmholtz[1-cube]
ranks = 1, domain = 'cube', extra = []
✅ testParallelGMG[4-interval-P3-False]
✅ testParallelGMG[1-interval-P3-True]
✅ testParallelGMG[1-interval-P3-False]
✅ testParallelGMG[4-square-P1-False]
❌ testHelmholtz[4-square]
ranks = 4, domain = 'square', extra = []
✅ testParallelGMG[1-square-P1-True]
✅ testParallelGMG[1-square-P1-False]
❌ testHelmholtz[1-square]
ranks = 1, domain = 'square', extra = []
✅ testParallelGMG[4-interval-P2-False]
✅ testParallelGMG[1-interval-P2-True]
❌ testParallelGMG[1-interval-P2-False]
ranks = 1, domain = 'interval', element = 'P2', symmetric = False, extra = []
✅ testParallelGMG[4-interval-P1-False]
✅ testHelmholtz[4-interval]
✅ testHelmholtz[1-interval]
✅ testInterface[domainNoRef0]
✅ testInterface[domainNoRef1]
✅ test_tupleDict
✅ test_arrayIndexSet
✅ test_bitArray
✅ test_integrals_drift[square]
✅ test_integrals_grad[square]
tests.test_drivers_intFracLapl
✅ testNonlocal[interval-fractional-poly-Dirichlet-lu-dense]
❌ testNonlocal[interval-fractional-poly-Neumann-lu-dense]
runNonlocal_params = ('interval', 'fractional', 'poly-Neumann', 'lu', 'dense')
✅ testNonlocal[interval-constant-poly-Dirichlet-lu-dense]
❌ testNonlocal[interval-constant-poly-Neumann-lu-dense]
runNonlocal_params = ('interval', 'constant', 'poly-Neumann', 'lu', 'dense')
✅ testNonlocal[interval-inverseDistance-poly-Dirichlet-lu-dense]
❌ testNonlocal[interval-inverseDistance-poly-Neumann-lu-dense]
runNonlocal_params = ('interval', 'inverseDistance', 'poly-Neumann', 'lu', 'dense')
✅ testNonlocal[square-fractional-poly-Dirichlet-cg-mg-dense]
⚪ testNonlocal[square-fractional-poly-Neumann-cg-mg-dense]
✅ testNonlocal[square-constant-poly-Dirichlet-cg-mg-dense]
⚪ testNonlocal[square-constant-poly-Neumann-cg-mg-dense]
✅ testNonlocal[square-inverseDistance-poly-Dirichlet-cg-mg-dense]
⚪ testNonlocal[square-inverseDistance-poly-Neumann-cg-mg-dense]
✅ testNonlocal[interval-fractional-poly-Dirichlet-lu-H2]
❌ testNonlocal[interval-fractional-poly-Neumann-lu-H2]
runNonlocal_params = ('interval', 'fractional', 'poly-Neumann', 'lu', 'H2')
✅ testNonlocal[interval-constant-poly-Dirichlet-lu-H2]
❌ testNonlocal[interval-constant-poly-Neumann-lu-H2]
runNonlocal_params = ('interval', 'constant', 'poly-Neumann', 'lu', 'H2')
❌ testNonlocal[interval-inverseDistance-poly-Dirichlet-lu-H2]
runNonlocal_params = ('interval', 'inverseDistance', 'poly-Dirichlet', 'lu', 'H2')
❌ testNonlocal[interval-inverseDistance-poly-Neumann-lu-H2]
runNonlocal_params = ('interval', 'inverseDistance', 'poly-Neumann', 'lu', 'H2')
✅ testNonlocal[square-fractional-poly-Dirichlet-cg-mg-H2]
⚪ testNonlocal[square-fractional-poly-Neumann-cg-mg-H2]
✅ testNonlocal[square-constant-poly-Dirichlet-cg-mg-H2]
⚪ testNonlocal[square-constant-poly-Neumann-cg-mg-H2]
✅ testNonlocal[square-inverseDistance-poly-Dirichlet-cg-mg-H2]
⚪ testNonlocal[square-inverseDistance-poly-Neumann-cg-mg-H2]
✅ testFractional[interval-const0.25-constant-P0-cg-mg-dense]
❌ testFractionalHeat[interval-const0.25-constant-P0-cg-mg-dense]
runFractional_params = ('interval', 'const(0.25)', 'constant', 'P0', 'cg-mg', 'dense')
✅ testFractional[interval-const0.25-constant-P0-cg-mg-H2]
❌ testFractionalHeat[interval-const0.25-constant-P0-cg-mg-H2]
runFractional_params = ('interval', 'const(0.25)', 'constant', 'P0', 'cg-mg', 'H2')
✅ testFractional[interval-const0.25-constant-P1-cg-mg-dense]
❌ testFractionalHeat[interval-const0.25-constant-P1-cg-mg-dense]
runFractional_params = ('interval', 'const(0.25)', 'constant', 'P1', 'cg-mg', 'dense')
✅ testFractional[interval-const0.25-constant-P1-cg-mg-H2]
❌ testFractionalHeat[interval-const0.25-constant-P1-cg-mg-H2]
runFractional_params = ('interval', 'const(0.25)', 'constant', 'P1', 'cg-mg', 'H2')
❌ testFractional[interval-const0.25-zeroFlux-P1-lu-H2]
runFractional_params = ('interval', 'const(0.25)', 'zeroFlux', 'P1', 'lu', 'H2')
❌ testFractionalHeat[interval-const0.25-zeroFlux-P1-lu-H2]
runFractional_params = ('interval', 'const(0.25)', 'zeroFlux', 'P1', 'lu', 'H2')
✅ testFractional[interval-const0.25-knownSolution-P1-cg-jacobi-H2]
❌ testFractionalHeat[interval-const0.25-knownSolution-P1-cg-jacobi-H2]
runFractional_params = ('interval', 'const(0.25)', 'knownSolution', 'P1', 'cg-jacobi', 'H2')
✅ testFractional[interval-const0.75-constant-P1-lu-dense]
❌ testFractionalHeat[interval-const0.75-constant-P1-lu-dense]
runFractional_params = ('interval', 'const(0.75)', 'constant', 'P1', 'lu', 'dense')
✅ testFractional[interval-const0.75-constant-P1-lu-H2]
❌ testFractionalHeat[interval-const0.75-constant-P1-lu-H2]
runFractional_params = ('interval', 'const(0.75)', 'constant', 'P1', 'lu', 'H2')
❌ testFractional[interval-const0.75-zeroFlux-P1-cg-jacobi-H2]
runFractional_params = ('interval', 'const(0.75)', 'zeroFlux', 'P1', 'cg-jacobi', 'H2')
❌ testFractionalHeat[interval-const0.75-zeroFlux-P1-cg-jacobi-H2]
runFractional_params = ('interval', 'const(0.75)', 'zeroFlux', 'P1', 'cg-jacobi', 'H2')
✅ testFractional[interval-const0.75-knownSolution-P1-cg-mg-H2]
❌ testFractionalHeat[interval-const0.75-knownSolution-P1-cg-mg-H2]
runFractional_params = ('interval', 'const(0.75)', 'knownSolution', 'P1', 'cg-mg', 'H2')
✅ testFractional[interval-varconst0.75-constant-P1-cg-jacobi-dense]
❌ testFractionalHeat[interval-varconst0.75-constant-P1-cg-jacobi-dense]
runFractional_params = ('interval', 'varconst(0.75)', 'constant', 'P1', 'cg-jacobi', 'dense')
✅ testFractional[interval-varconst0.75-constant-P1-cg-jacobi-H2]
❌ testFractionalHeat[interval-varconst0.75-constant-P1-cg-jacobi-H2]
runFractional_params = ('interval', 'varconst(0.75)', 'constant', 'P1', 'cg-jacobi', 'H2')
✅ testFractional[interval-varconst0.75-zeroFlux-P1-cg-mg-H2]
❌ testFractionalHeat[interval-varconst0.75-zeroFlux-P1-cg-mg-H2]
runFractional_params = ('interval', 'varconst(0.75)', 'zeroFlux', 'P1', 'cg-mg', 'H2')
✅ testFractional[interval-varconst0.75-knownSolution-P1-lu-H2]
❌ testFractionalHeat[interval-varconst0.75-knownSolution-P1-lu-H2]
runFractional_params = ('interval', 'varconst(0.75)', 'knownSolution', 'P1', 'lu', 'H2')
✅ testFractional[interval-const0.25-constant-P2-cg-mg-dense]
❌ testFractionalHeat[interval-const0.25-constant-P2-cg-mg-dense]
runFractional_params = ('interval', 'const(0.25)', 'constant', 'P2', 'cg-mg', 'dense')
✅ testFractional[interval-const0.25-constant-P2-cg-mg-H2]
❌ testFractionalHeat[interval-const0.25-constant-P2-cg-mg-H2]
runFractional_params = ('interval', 'const(0.25)', 'constant', 'P2', 'cg-mg', 'H2')
✅ testFractional[interval-const0.75-constant-P2-cg-mg-dense]
❌ testFractionalHeat[interval-const0.75-constant-P2-cg-mg-dense]
runFractional_params = ('interval', 'const(0.75)', 'constant', 'P2', 'cg-mg', 'dense')
✅ testFractional[interval-const0.75-constant-P2-cg-mg-H2]
❌ testFractionalHeat[interval-const0.75-constant-P2-cg-mg-H2]
runFractional_params = ('interval', 'const(0.75)', 'constant', 'P2', 'cg-mg', 'H2')
✅ testFractional[interval-const0.25-constant-P3-cg-mg-dense]
❌ testFractionalHeat[interval-const0.25-constant-P3-cg-mg-dense]
runFractional_params = ('interval', 'const(0.25)', 'constant', 'P3', 'cg-mg', 'dense')
✅ testFractional[interval-const0.25-constant-P3-cg-mg-H2]
❌ testFractionalHeat[interval-const0.25-constant-P3-cg-mg-H2]
runFractional_params = ('interval', 'const(0.25)', 'constant', 'P3', 'cg-mg', 'H2')
✅ testFractional[interval-const0.75-constant-P3-cg-mg-dense]
❌ testFractionalHeat[interval-const0.75-constant-P3-cg-mg-dense]
runFractional_params = ('interval', 'const(0.75)', 'constant', 'P3', 'cg-mg', 'dense')
✅ testFractional[interval-const0.75-constant-P3-cg-mg-H2]
❌ testFractionalHeat[interval-const0.75-constant-P3-cg-mg-H2]
runFractional_params = ('interval', 'const(0.75)', 'constant', 'P3', 'cg-mg', 'H2')
✅ testFractional[disc-const0.25-constant-P0-cg-mg-dense]
❌ testFractionalHeat[disc-const0.25-constant-P0-cg-mg-dense]
runFractional_params = ('disc', 'const(0.25)', 'constant', 'P0', 'cg-mg', 'dense')
✅ testFractional[disc-const0.25-constant-P0-cg-mg-H2]
❌ testFractionalHeat[disc-const0.25-constant-P0-cg-mg-H2]
runFractional_params = ('disc', 'const(0.25)', 'constant', 'P0', 'cg-mg', 'H2')
✅ testFractional[disc-const0.25-constant-P1-cg-mg-dense]
❌ testFractionalHeat[disc-const0.25-constant-P1-cg-mg-dense]
runFractional_params = ('disc', 'const(0.25)', 'constant', 'P1', 'cg-mg', 'dense')
✅ testFractional[disc-const0.25-constant-P1-cg-mg-H2]
❌ testFractionalHeat[disc-const0.25-constant-P1-cg-mg-H2]
runFractional_params = ('disc', 'const(0.25)', 'constant', 'P1', 'cg-mg', 'H2')
✅ testFractional[disc-const0.75-constant-P1-cg-mg-dense]
❌ testFractionalHeat[disc-const0.75-constant-P1-cg-mg-dense]
runFractional_params = ('disc', 'const(0.75)', 'constant', 'P1', 'cg-mg', 'dense')
✅ testFractional[disc-const0.75-constant-P1-cg-mg-H2]
❌ testFractionalHeat[disc-const0.75-constant-P1-cg-mg-H2]
runFractional_params = ('disc', 'const(0.75)', 'constant', 'P1', 'cg-mg', 'H2')
✅ testVariableOrder
✅ testMatvecs[interval-const0.25]
✅ testMatvecs[interval-const0.75]
✅ testMatvecs[interval-varconst0.25]
✅ testMatvecs[interval-varconst0.75]
✅ testMatvecs[square-const0.25]
✅ testMatvecs[square-const0.75]
✅ testMatvecs[square-varconst0.25]
✅ testMatvecs[square-varconst0.75]
tests.test_fracLapl
✅ testFracLapl[1-P1-0.3]
✅ testFracLapl[1-P1-0.7]
✅ testFracLapl[2-P1-0.3]
✅ testFracLapl[2-P1-0.7]
✅ testScaling[1-0.25-inf]
✅ testScaling[1-0.25-1]
✅ testScaling[1-0.75-inf]
✅ testScaling[1-0.75-1]
✅ testScaling[2-0.25-inf]
✅ testScaling[2-0.25-1]
✅ testScaling[2-0.75-inf]
✅ testScaling[2-0.75-1]
✅ testH2[1-0.3-0.0001-P1]
✅ testH2[1-0.7-0.01-P1]
✅ testH2[2-0.3-0.00012-P1]
✅ testH2[2-0.7-0.01-P1]
tests.test_h2finiteHorizon
✅ test_h2_finite[1-0.25-1.0-0.5-True]
✅ test_h2_finite[1-0.75-1.0-0.5-True]
✅ test_h2_finite[1-0.25-1.0-0.5-False]
✅ test_h2_finite[1-0.75-1.0-0.5-False]
✅ test_h2_finite[1-0.25-1.0-2.5-False]
✅ test_h2_finite[1-0.75-1.0-2.5-False]
tests.test_kernels
✅ testIntegrableKernel[dim1-kernelTypeconstanthorizon0.5-normalizedTrue]
✅ testIntegrableKernel[dim1-kernelTypeconstanthorizon0.5-normalizedFalse]
✅ testIntegrableKernel[dim1-kernelTypeinverseDistancehorizon0.5-normalizedTrue]
✅ testIntegrableKernel[dim1-kernelTypeinverseDistancehorizon0.5-normalizedFalse]
✅ testIntegrableKernel[dim1-kernelTypeGaussianhorizon0.5-normalizedTrue]
✅ testIntegrableKernel[dim1-kernelTypeGaussianhorizon0.5-normalizedFalse]
✅ testIntegrableKernel[dim2-kernelTypeconstanthorizon0.5-normalizedTrue]
✅ testIntegrableKernel[dim2-kernelTypeconstanthorizon0.5-normalizedFalse]
✅ testIntegrableKernel[dim2-kernelTypeinverseDistancehorizon0.5-normalizedTrue]
✅ testIntegrableKernel[dim2-kernelTypeinverseDistancehorizon0.5-normalizedFalse]
✅ testIntegrableKernel[dim2-kernelTypeGaussianhorizon0.5-normalizedTrue]
✅ testIntegrableKernel[dim2-kernelTypeGaussianhorizon0.5-normalizedFalse]
✅ testFractionalKernel[dim1-s0.25-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-s0.25-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-s0.25-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-s0.25-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-s0.75-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-s0.75-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-s0.75-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-s0.75-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.25,sym=1)-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.25,sym=1)-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.25,sym=1)-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.25,sym=1)-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.75,sym=1)-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.75,sym=1)-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.75,sym=1)-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.75,sym=1)-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.25)-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.25)-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.25)-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.25)-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.75)-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.75)-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.75)-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.75)-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedTrue-phiNone-derivative00]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedFalse-phiNone-derivative00]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedTrue-phiNone-derivative00]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedFalse-phiNone-derivative00]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedTrue-phiNone-derivative01]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedFalse-phiNone-derivative01]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedTrue-phiNone-derivative01]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedFalse-phiNone-derivative01]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedTrue-phiNone-derivative02]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedFalse-phiNone-derivative02]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedTrue-phiNone-derivative02]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedFalse-phiNone-derivative02]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedTrue-phiNone-derivative03]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedFalse-phiNone-derivative03]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedTrue-phiNone-derivative03]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedFalse-phiNone-derivative03]
✅ testFractionalKernel[dim1-s0.25-horizoninf-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-s0.25-horizoninf-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-s0.25-horizon0.5-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-s0.25-horizon0.5-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-s0.75-horizoninf-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-s0.75-horizoninf-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-s0.75-horizon0.5-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-s0.75-horizon0.5-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.25,sym=1)-horizoninf-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.25,sym=1)-horizoninf-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.25,sym=1)-horizon0.5-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.25,sym=1)-horizon0.5-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.75,sym=1)-horizoninf-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.75,sym=1)-horizoninf-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.75,sym=1)-horizon0.5-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.75,sym=1)-horizon0.5-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.25)-horizoninf-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.25)-horizoninf-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.25)-horizon0.5-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.25)-horizon0.5-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.75)-horizoninf-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.75)-horizoninf-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.75)-horizon0.5-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.75)-horizon0.5-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizoninf-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizoninf-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizon0.5-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizon0.5-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizoninf-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizoninf-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizon0.5-normalizedTrue-phi2.0-derivative0]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizon0.5-normalizedFalse-phi2.0-derivative0]
✅ testFractionalKernel[dim1-s0.25-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-s0.25-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-s0.25-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-s0.25-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-s0.75-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-s0.75-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-s0.75-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-s0.75-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.25,sym=1)-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.25,sym=1)-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.25,sym=1)-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.25,sym=1)-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.75,sym=1)-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.75,sym=1)-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.75,sym=1)-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-svariableConstFractionalOrder(s=0.75,sym=1)-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.25)-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.25)-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.25)-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.25)-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.75)-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.75)-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.75)-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-sconstantNonSymFractionalOrder(0.75)-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim1-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedTrue-phiNone-derivative10]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedFalse-phiNone-derivative10]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedTrue-phiNone-derivative10]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedFalse-phiNone-derivative10]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedTrue-phiNone-derivative11]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedFalse-phiNone-derivative11]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedTrue-phiNone-derivative11]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedFalse-phiNone-derivative11]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedTrue-phiNone-derivative12]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedFalse-phiNone-derivative12]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedTrue-phiNone-derivative12]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedFalse-phiNone-derivative12]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedTrue-phiNone-derivative13]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizoninf-normalizedFalse-phiNone-derivative13]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedTrue-phiNone-derivative13]
✅ testFractionalKernel[dim1-sfeFractionalOrder(lookupExtended)-horizon0.5-normalizedFalse-phiNone-derivative13]
✅ testFractionalKernel[dim2-s0.25-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-s0.25-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-s0.25-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-s0.25-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-s0.75-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-s0.75-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-s0.75-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-s0.75-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.25,sym=1)-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.25,sym=1)-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.25,sym=1)-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.25,sym=1)-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.75,sym=1)-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.75,sym=1)-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.75,sym=1)-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.75,sym=1)-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.25)-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.25)-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.25)-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.25)-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.75)-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.75)-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.75)-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.75)-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizoninf-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizoninf-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizon0.5-normalizedTrue-phiNone-derivative0]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizon0.5-normalizedFalse-phiNone-derivative0]
✅ testFractionalKernel[dim2-s0.25-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-s0.25-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-s0.25-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-s0.25-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-s0.75-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-s0.75-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-s0.75-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-s0.75-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.25,sym=1)-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.25,sym=1)-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.25,sym=1)-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.25,sym=1)-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.75,sym=1)-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.75,sym=1)-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.75,sym=1)-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-svariableConstFractionalOrder(s=0.75,sym=1)-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.25)-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.25)-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.25)-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.25)-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.75)-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.75)-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.75)-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-sconstantNonSymFractionalOrder(0.75)-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.75,sr=0.25,r=0.1,interface=0.0))-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizoninf-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizoninf-normalizedFalse-phiNone-derivative1]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizon0.5-normalizedTrue-phiNone-derivative1]
✅ testFractionalKernel[dim2-ssmoothedLeftRightFractionalOrder(smoothStep(sl=0.25,sr=0.75,r=0.1,interface=0.0))-horizon0.5-normalizedFalse-phiNone-derivative1]
✅ test_discrete_s_const
✅ test_discrete_leftRight
tests.test_nearField.const1D_025
✅ testConstCluster
✅ testConstH2
✅ testVarDense
✅ testVarCluster
tests.test_nearField.const1D_075
✅ testConstCluster
✅ testConstH2
✅ testVarDense
✅ testVarCluster
tests.test_nearField.const1D_025_finiteHorizon
✅ testConstCluster
✅ testConstH2
✅ testVarDense
✅ testVarCluster
tests.test_nearField.const1D_075_finiteHorizon
✅ testConstCluster
✅ testConstH2
✅ testVarDense
✅ testVarCluster
tests.test_nearField.leftRight1D
⚪ testConstCluster
⚪ testConstH2
⚪ testVarDense
✅ testVarCluster
tests.test_nearField.leftRight1DfiniteHorizon
⚪ testConstCluster
⚪ testConstH2
⚪ testVarDense
✅ testVarCluster
tests.test_nearField.const2D_025
✅ testConstCluster
⚪ testConstH2
✅ testVarDense
✅ testVarCluster
tests.test_nearField.const2D_075
✅ testConstCluster
⚪ testConstH2
✅ testVarDense
✅ testVarCluster
tests.test_nearField.leftRight2DinfiniteHorizon
⚪ testConstCluster
⚪ testConstH2
⚪ testVarDense
✅ testVarCluster
tests.test_nearField.layers2D
⚪ testConstCluster
⚪ testConstH2
⚪ testVarDense
✅ testVarCluster
Annotations
Check failure on line 0 in test-results-3.11.xml
github-actions / Test report (Python 3.11)
pytest ► tests.test_base ► testHelmholtz[4-cube]
Failed test found in:
test-results-3.11.xml
Error:
ranks = 4, domain = 'cube', extra = []
Raw output
ranks = 4, domain = 'cube', extra = []
def testHelmholtz(ranks, domain, extra):
base = getPath()+'/../'
py = ['runHelmholtz.py', '--domain', domain]
path = base+'drivers'
cacheDir = getPath()+'/'
> runDriver(path, py, ranks=ranks, cacheDir=cacheDir, extra=extra)
tests/drivers_base.py:73:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
path = '/home/runner/work/PyNucleus/PyNucleus/tests/../drivers'
py = ['runHelmholtz.py', '--domain', 'cube', '--test', '--testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runHelmholtz.py--domaincube4', '--skipPlots']
python = '/opt/hostedtoolcache/Python/3.11.5/x64/bin/python3', timeout = 600
ranks = 4, cacheDir = '/home/runner/work/PyNucleus/PyNucleus/tests/'
overwriteCache = False, aTol = 1e-12, relTol = 0.01, extra = None
def runDriver(path, py, python=None, timeout=600, ranks=None, cacheDir='',
overwriteCache=False,
aTol=1e-12, relTol=1e-2, extra=None):
from subprocess import Popen, PIPE, TimeoutExpired
import logging
import os
from pathlib import Path
logger = logging.getLogger('__main__')
if not isinstance(py, (list, tuple)):
py = [py]
autotesterOutput = Path('/home/caglusa/autotester/html')
if autotesterOutput.exists():
plotDir = autotesterOutput/('test-plots/'+''.join(py)+'/')
else:
extra = None
if cacheDir != '':
cache = cacheDir+'/cache_' + ''.join(py)
runOutput = cacheDir+'/run_' + ''.join(py)
if ranks is not None:
cache += str(ranks)
runOutput += str(ranks)
py += ['--test', '--testCache={}'.format(cache)]
if overwriteCache:
py += ['--overwriteCache']
else:
py += ['--test']
if extra is not None:
plotDir.mkdir(exist_ok=True, parents=True)
py += ['--plotFolder={}'.format(plotDir), '--plotFormat=png']
else:
py += ['--skipPlots']
assert (Path(path)/py[0]).exists(), 'Driver \"{}\" does not exist'.format(Path(path)/py[0])
if ranks is None:
ranks = 1
if python is None:
import sys
python = sys.executable
cmd = [python] + py
if 'MPIEXEC_FLAGS' in os.environ:
mpi_flags = str(os.environ['MPIEXEC_FLAGS'])
else:
mpi_flags = '--bind-to none'
cmd = ['mpiexec'] + mpi_flags.split(' ') + ['-n', str(ranks)]+cmd
logger.info('Launching "{}" from "{}"'.format(' '.join(cmd), path))
my_env = {}
for key in os.environ:
if key.find('OMPI') == -1:
my_env[key] = os.environ[key]
proc = Popen(cmd, cwd=path,
stdout=PIPE, stderr=PIPE,
universal_newlines=True,
env=my_env)
try:
stdout, stderr = proc.communicate(timeout=timeout)
except TimeoutExpired:
proc.kill()
raise
if len(stdout) > 0:
logger.info(stdout)
if len(stderr) > 0:
logger.error(stderr)
> assert proc.returncode == 0, stderr+'\n\n'+stdout
E AssertionError: 2023-09-07 13:20:06 root
E 1: Traceback (most recent call last):
E 1: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runHelmholtz.py", line 45, in <module>
E hierarchies, connectors = paramsForMG(p.noRef,
E ^^^^^^^
E 1: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1624, in getter
E builder()
E 1: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1491, in __call__
E self.fun(*args)
E 1: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_fem/pdeProblems.py", line 255, in processProblem
E self.rhs = (np.vdot(xi, xi)-self.frequency**2) * self.solEx
E ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E 1: TypeError: unsupported operand type(s) for *: 'float' and 'PyNucleus_fem.functions.waveFunction'
E
E 2023-09-07 13:20:06 root
E 3: Traceback (most recent call last):
E 3: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runHelmholtz.py", line 45, in <module>
E hierarchies, connectors = paramsForMG(p.noRef,
E ^^^^^^^
E 3: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1624, in getter
E builder()
E 3: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1491, in __call__
E self.fun(*args)
E 3: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_fem/pdeProblems.py", line 255, in processProblem
E self.rhs = (np.vdot(xi, xi)-self.frequency**2) * self.solEx
E ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E 3: TypeError: unsupported operand type(s) for *: 'float' and 'PyNucleus_fem.functions.waveFunction'
E
E --------------------------------------------------------------------------
E MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD
E with errorcode 1234.
E
E NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
E You may or may not see output from other processes, depending on
E exactly when Open MPI kills them.
E --------------------------------------------------------------------------
E [fv-az283-77:05199] 1 more process has sent help message help-mpi-api.txt / mpi-abort
E [fv-az283-77:05199] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py:1412: AssertionError
Check failure on line 0 in test-results-3.11.xml
github-actions / Test report (Python 3.11)
pytest ► tests.test_base ► testHelmholtz[1-cube]
Failed test found in:
test-results-3.11.xml
Error:
ranks = 1, domain = 'cube', extra = []
Raw output
ranks = 1, domain = 'cube', extra = []
def testHelmholtz(ranks, domain, extra):
base = getPath()+'/../'
py = ['runHelmholtz.py', '--domain', domain]
path = base+'drivers'
cacheDir = getPath()+'/'
> runDriver(path, py, ranks=ranks, cacheDir=cacheDir, extra=extra)
tests/drivers_base.py:73:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
path = '/home/runner/work/PyNucleus/PyNucleus/tests/../drivers'
py = ['runHelmholtz.py', '--domain', 'cube', '--test', '--testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runHelmholtz.py--domaincube1', '--skipPlots']
python = '/opt/hostedtoolcache/Python/3.11.5/x64/bin/python3', timeout = 600
ranks = 1, cacheDir = '/home/runner/work/PyNucleus/PyNucleus/tests/'
overwriteCache = False, aTol = 1e-12, relTol = 0.01, extra = None
def runDriver(path, py, python=None, timeout=600, ranks=None, cacheDir='',
overwriteCache=False,
aTol=1e-12, relTol=1e-2, extra=None):
from subprocess import Popen, PIPE, TimeoutExpired
import logging
import os
from pathlib import Path
logger = logging.getLogger('__main__')
if not isinstance(py, (list, tuple)):
py = [py]
autotesterOutput = Path('/home/caglusa/autotester/html')
if autotesterOutput.exists():
plotDir = autotesterOutput/('test-plots/'+''.join(py)+'/')
else:
extra = None
if cacheDir != '':
cache = cacheDir+'/cache_' + ''.join(py)
runOutput = cacheDir+'/run_' + ''.join(py)
if ranks is not None:
cache += str(ranks)
runOutput += str(ranks)
py += ['--test', '--testCache={}'.format(cache)]
if overwriteCache:
py += ['--overwriteCache']
else:
py += ['--test']
if extra is not None:
plotDir.mkdir(exist_ok=True, parents=True)
py += ['--plotFolder={}'.format(plotDir), '--plotFormat=png']
else:
py += ['--skipPlots']
assert (Path(path)/py[0]).exists(), 'Driver \"{}\" does not exist'.format(Path(path)/py[0])
if ranks is None:
ranks = 1
if python is None:
import sys
python = sys.executable
cmd = [python] + py
if 'MPIEXEC_FLAGS' in os.environ:
mpi_flags = str(os.environ['MPIEXEC_FLAGS'])
else:
mpi_flags = '--bind-to none'
cmd = ['mpiexec'] + mpi_flags.split(' ') + ['-n', str(ranks)]+cmd
logger.info('Launching "{}" from "{}"'.format(' '.join(cmd), path))
my_env = {}
for key in os.environ:
if key.find('OMPI') == -1:
my_env[key] = os.environ[key]
proc = Popen(cmd, cwd=path,
stdout=PIPE, stderr=PIPE,
universal_newlines=True,
env=my_env)
try:
stdout, stderr = proc.communicate(timeout=timeout)
except TimeoutExpired:
proc.kill()
raise
if len(stdout) > 0:
logger.info(stdout)
if len(stderr) > 0:
logger.error(stderr)
> assert proc.returncode == 0, stderr+'\n\n'+stdout
E AssertionError: 2023-09-07 13:21:20 __main__
E {'debugOverlaps': False,
E 'disableFileLog': False,
E 'disableHeader': False,
E 'disableTimeStamps': False,
E 'displayConfig': True,
E 'displayRanks': False,
E 'domain': 'cube',
E 'element': 'P1',
E 'frequency': 40.0,
E 'hdf5Input': '',
E 'hdf5Output': '',
E 'logDependencies': False,
E 'logProperties': '',
E 'maxiter': 300,
E 'mpiGlobalCommSize': 1,
E 'overwriteCache': False,
E 'partitioner': 'regular',
E 'partitionerParams': {},
E 'plotFolder': '',
E 'plotFormat': 'pdf',
E 'plot_error': True,
E 'plot_solution': True,
E 'problem': 'wave',
E 'reorder': False,
E 'showDependencyGraph': False,
E 'showMemory': False,
E 'showTimers': True,
E 'skipPlots': True,
E 'symmetric': False,
E 'test': True,
E 'testCache': '/home/runner/work/PyNucleus/PyNucleus/tests//cache_runHelmholtz.py--domaincube1',
E 'yamlInput': '',
E 'yamlOutput': ''}
E 2023-09-07 13:21:20 __main__
E Running: /opt/hostedtoolcache/Python/3.11.5/x64/bin/python3 runHelmholtz.py --domain cube --test --testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runHelmholtz.py--domaincube1 --skipPlots
E Open MPI v4.1.2, package: Debian OpenMPI, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021
E MPI standard supported: (3, 1)
E Vendor: ('Open MPI', (4, 1, 2))
E Level of thread support: multiple
E Is threaded: True
E Threads requested: True
E Thread level requested: multiple
E Hosts: fv-az283-77
E Communicator size: 1
E OMP_NUM_THREADS: not set
E numpy: 1.25.2
E scipy: 1.11.2
E mpi4py: 3.1.4
E cython: 3.0.2
E PyNucleus_base,fem,metisCy,multilevelSolver,nl,packageTools:1.1rc0
E
E 2023-09-07 13:21:20 __main__ setup levels in 0.000257 s
E 2023-09-07 13:21:20 root
E 0: Traceback (most recent call last):
E 0: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runHelmholtz.py", line 45, in <module>
E hierarchies, connectors = paramsForMG(p.noRef,
E ^^^^^^^
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1624, in getter
E builder()
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1491, in __call__
E self.fun(*args)
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_fem/pdeProblems.py", line 255, in processProblem
E self.rhs = (np.vdot(xi, xi)-self.frequency**2) * self.solEx
E ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E 0: TypeError: unsupported operand type(s) for *: 'float' and 'PyNucleus_fem.functions.waveFunction'
E
E --------------------------------------------------------------------------
E MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
E with errorcode 1234.
E
E NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
E You may or may not see output from other processes, depending on
E exactly when Open MPI kills them.
E --------------------------------------------------------------------------
/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py:1412: AssertionError
Check failure on line 0 in test-results-3.11.xml
github-actions / Test report (Python 3.11)
pytest ► tests.test_base ► testHelmholtz[4-square]
Failed test found in:
test-results-3.11.xml
Error:
ranks = 4, domain = 'square', extra = []
Raw output
ranks = 4, domain = 'square', extra = []
def testHelmholtz(ranks, domain, extra):
base = getPath()+'/../'
py = ['runHelmholtz.py', '--domain', domain]
path = base+'drivers'
cacheDir = getPath()+'/'
> runDriver(path, py, ranks=ranks, cacheDir=cacheDir, extra=extra)
tests/drivers_base.py:73:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
path = '/home/runner/work/PyNucleus/PyNucleus/tests/../drivers'
py = ['runHelmholtz.py', '--domain', 'square', '--test', '--testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runHelmholtz.py--domainsquare4', '--skipPlots']
python = '/opt/hostedtoolcache/Python/3.11.5/x64/bin/python3', timeout = 600
ranks = 4, cacheDir = '/home/runner/work/PyNucleus/PyNucleus/tests/'
overwriteCache = False, aTol = 1e-12, relTol = 0.01, extra = None
def runDriver(path, py, python=None, timeout=600, ranks=None, cacheDir='',
overwriteCache=False,
aTol=1e-12, relTol=1e-2, extra=None):
from subprocess import Popen, PIPE, TimeoutExpired
import logging
import os
from pathlib import Path
logger = logging.getLogger('__main__')
if not isinstance(py, (list, tuple)):
py = [py]
autotesterOutput = Path('/home/caglusa/autotester/html')
if autotesterOutput.exists():
plotDir = autotesterOutput/('test-plots/'+''.join(py)+'/')
else:
extra = None
if cacheDir != '':
cache = cacheDir+'/cache_' + ''.join(py)
runOutput = cacheDir+'/run_' + ''.join(py)
if ranks is not None:
cache += str(ranks)
runOutput += str(ranks)
py += ['--test', '--testCache={}'.format(cache)]
if overwriteCache:
py += ['--overwriteCache']
else:
py += ['--test']
if extra is not None:
plotDir.mkdir(exist_ok=True, parents=True)
py += ['--plotFolder={}'.format(plotDir), '--plotFormat=png']
else:
py += ['--skipPlots']
assert (Path(path)/py[0]).exists(), 'Driver \"{}\" does not exist'.format(Path(path)/py[0])
if ranks is None:
ranks = 1
if python is None:
import sys
python = sys.executable
cmd = [python] + py
if 'MPIEXEC_FLAGS' in os.environ:
mpi_flags = str(os.environ['MPIEXEC_FLAGS'])
else:
mpi_flags = '--bind-to none'
cmd = ['mpiexec'] + mpi_flags.split(' ') + ['-n', str(ranks)]+cmd
logger.info('Launching "{}" from "{}"'.format(' '.join(cmd), path))
my_env = {}
for key in os.environ:
if key.find('OMPI') == -1:
my_env[key] = os.environ[key]
proc = Popen(cmd, cwd=path,
stdout=PIPE, stderr=PIPE,
universal_newlines=True,
env=my_env)
try:
stdout, stderr = proc.communicate(timeout=timeout)
except TimeoutExpired:
proc.kill()
raise
if len(stdout) > 0:
logger.info(stdout)
if len(stderr) > 0:
logger.error(stderr)
> assert proc.returncode == 0, stderr+'\n\n'+stdout
E AssertionError: 2023-09-07 13:21:35 __main__
E {'debugOverlaps': False,
E 'disableFileLog': False,
E 'disableHeader': False,
E 'disableTimeStamps': False,
E 'displayConfig': True,
E 'displayRanks': False,
E 'domain': 'square',
E 'element': 'P1',
E 'frequency': 40.0,
E 'hdf5Input': '',
E 'hdf5Output': '',
E 'logDependencies': False,
E 'logProperties': '',
E 'maxiter': 300,
E 'mpiGlobalCommSize': 4,
E 'overwriteCache': False,
E 'partitioner': 'regular',
E 'partitionerParams': {},
E 'plotFolder': '',
E 'plotFormat': 'pdf',
E 'plot_error': True,
E 'plot_solution': True,
E 'problem': 'wave',
E 'reorder': False,
E 'showDependencyGraph': False,
E 'showMemory': False,
E 'showTimers': True,
E 'skipPlots': True,
E 'symmetric': False,
E 'test': True,
E 'testCache': '/home/runner/work/PyNucleus/PyNucleus/tests//cache_runHelmholtz.py--domainsquare4',
E 'yamlInput': '',
E 'yamlOutput': ''}
E 2023-09-07 13:21:35 root
E 1: Traceback (most recent call last):
E 1: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runHelmholtz.py", line 45, in <module>
E hierarchies, connectors = paramsForMG(p.noRef,
E ^^^^^^^
E 1: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1624, in getter
E builder()
E 1: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1491, in __call__
E self.fun(*args)
E 1: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_fem/pdeProblems.py", line 225, in processProblem
E self.rhs = (np.vdot(xi, xi)-self.frequency**2) * self.solEx
E ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E 1: TypeError: unsupported operand type(s) for *: 'float' and 'PyNucleus_fem.functions.waveFunction'
E
E 2023-09-07 13:21:35 root
E 2: Traceback (most recent call last):
E 2: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runHelmholtz.py", line 45, in <module>
E hierarchies, connectors = paramsForMG(p.noRef,
E ^^^^^^^
E 2: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1624, in getter
E builder()
E 2: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1491, in __call__
E self.fun(*args)
E 2: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_fem/pdeProblems.py", line 225, in processProblem
E self.rhs = (np.vdot(xi, xi)-self.frequency**2) * self.solEx
E ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E 2: TypeError: unsupported operand type(s) for *: 'float' and 'PyNucleus_fem.functions.waveFunction'
E
E 2023-09-07 13:21:35 __main__
E Running: /opt/hostedtoolcache/Python/3.11.5/x64/bin/python3 runHelmholtz.py --domain square --test --testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runHelmholtz.py--domainsquare4 --skipPlots
E Open MPI v4.1.2, package: Debian OpenMPI, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021
E MPI standard supported: (3, 1)
E Vendor: ('Open MPI', (4, 1, 2))
E Level of thread support: multiple
E Is threaded: True
E Threads requested: True
E Thread level requested: multiple
E Hosts: fv-az283-77
E Communicator size: 4
E OMP_NUM_THREADS: not set
E numpy: 1.25.2
E scipy: 1.11.2
E mpi4py: 3.1.4
E cython: 3.0.2
E PyNucleus_base,fem,metisCy,multilevelSolver,nl,packageTools:1.1rc0
E
E 2023-09-07 13:21:35 __main__ setup levels in 0.000229 s
E --------------------------------------------------------------------------
E MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD
E with errorcode 1234.
E
E NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
E You may or may not see output from other processes, depending on
E exactly when Open MPI kills them.
E --------------------------------------------------------------------------
E 2023-09-07 13:21:35 root
E 0: Traceback (most recent call last):
E 0: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runHelmholtz.py", line 45, in <module>
E hierarchies, connectors = paramsForMG(p.noRef,
E ^^^^^^^
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1624, in getter
E builder()
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1491, in __call__
E self.fun(*args)
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_fem/pdeProblems.py", line 225, in processProblem
E self.rhs = (np.vdot(xi, xi)-self.frequency**2) * self.solEx
E ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E 0: TypeError: unsupported operand type(s) for *: 'float' and 'PyNucleus_fem.functions.waveFunction'
E
E 2023-09-07 13:21:35 root
E 3: Traceback (most recent call last):
E 3: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runHelmholtz.py", line 45, in <module>
E hierarchies, connectors = paramsForMG(p.noRef,
E ^^^^^^^
E 3: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1624, in getter
E builder()
E 3: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1491, in __call__
E self.fun(*args)
E 3: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_fem/pdeProblems.py", line 225, in processProblem
E self.rhs = (np.vdot(xi, xi)-self.frequency**2) * self.solEx
E ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E 3: TypeError: unsupported operand type(s) for *: 'float' and 'PyNucleus_fem.functions.waveFunction'
E
E [fv-az283-77:05319] 3 more processes have sent help message help-mpi-api.txt / mpi-abort
E [fv-az283-77:05319] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py:1412: AssertionError
Check failure on line 0 in test-results-3.11.xml
github-actions / Test report (Python 3.11)
pytest ► tests.test_base ► testHelmholtz[1-square]
Failed test found in:
test-results-3.11.xml
Error:
ranks = 1, domain = 'square', extra = []
Raw output
ranks = 1, domain = 'square', extra = []
def testHelmholtz(ranks, domain, extra):
base = getPath()+'/../'
py = ['runHelmholtz.py', '--domain', domain]
path = base+'drivers'
cacheDir = getPath()+'/'
> runDriver(path, py, ranks=ranks, cacheDir=cacheDir, extra=extra)
tests/drivers_base.py:73:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
path = '/home/runner/work/PyNucleus/PyNucleus/tests/../drivers'
py = ['runHelmholtz.py', '--domain', 'square', '--test', '--testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runHelmholtz.py--domainsquare1', '--skipPlots']
python = '/opt/hostedtoolcache/Python/3.11.5/x64/bin/python3', timeout = 600
ranks = 1, cacheDir = '/home/runner/work/PyNucleus/PyNucleus/tests/'
overwriteCache = False, aTol = 1e-12, relTol = 0.01, extra = None
def runDriver(path, py, python=None, timeout=600, ranks=None, cacheDir='',
overwriteCache=False,
aTol=1e-12, relTol=1e-2, extra=None):
from subprocess import Popen, PIPE, TimeoutExpired
import logging
import os
from pathlib import Path
logger = logging.getLogger('__main__')
if not isinstance(py, (list, tuple)):
py = [py]
autotesterOutput = Path('/home/caglusa/autotester/html')
if autotesterOutput.exists():
plotDir = autotesterOutput/('test-plots/'+''.join(py)+'/')
else:
extra = None
if cacheDir != '':
cache = cacheDir+'/cache_' + ''.join(py)
runOutput = cacheDir+'/run_' + ''.join(py)
if ranks is not None:
cache += str(ranks)
runOutput += str(ranks)
py += ['--test', '--testCache={}'.format(cache)]
if overwriteCache:
py += ['--overwriteCache']
else:
py += ['--test']
if extra is not None:
plotDir.mkdir(exist_ok=True, parents=True)
py += ['--plotFolder={}'.format(plotDir), '--plotFormat=png']
else:
py += ['--skipPlots']
assert (Path(path)/py[0]).exists(), 'Driver \"{}\" does not exist'.format(Path(path)/py[0])
if ranks is None:
ranks = 1
if python is None:
import sys
python = sys.executable
cmd = [python] + py
if 'MPIEXEC_FLAGS' in os.environ:
mpi_flags = str(os.environ['MPIEXEC_FLAGS'])
else:
mpi_flags = '--bind-to none'
cmd = ['mpiexec'] + mpi_flags.split(' ') + ['-n', str(ranks)]+cmd
logger.info('Launching "{}" from "{}"'.format(' '.join(cmd), path))
my_env = {}
for key in os.environ:
if key.find('OMPI') == -1:
my_env[key] = os.environ[key]
proc = Popen(cmd, cwd=path,
stdout=PIPE, stderr=PIPE,
universal_newlines=True,
env=my_env)
try:
stdout, stderr = proc.communicate(timeout=timeout)
except TimeoutExpired:
proc.kill()
raise
if len(stdout) > 0:
logger.info(stdout)
if len(stderr) > 0:
logger.error(stderr)
> assert proc.returncode == 0, stderr+'\n\n'+stdout
E AssertionError: 2023-09-07 13:21:45 __main__
E {'debugOverlaps': False,
E 'disableFileLog': False,
E 'disableHeader': False,
E 'disableTimeStamps': False,
E 'displayConfig': True,
E 'displayRanks': False,
E 'domain': 'square',
E 'element': 'P1',
E 'frequency': 40.0,
E 'hdf5Input': '',
E 'hdf5Output': '',
E 'logDependencies': False,
E 'logProperties': '',
E 'maxiter': 300,
E 'mpiGlobalCommSize': 1,
E 'overwriteCache': False,
E 'partitioner': 'regular',
E 'partitionerParams': {},
E 'plotFolder': '',
E 'plotFormat': 'pdf',
E 'plot_error': True,
E 'plot_solution': True,
E 'problem': 'wave',
E 'reorder': False,
E 'showDependencyGraph': False,
E 'showMemory': False,
E 'showTimers': True,
E 'skipPlots': True,
E 'symmetric': False,
E 'test': True,
E 'testCache': '/home/runner/work/PyNucleus/PyNucleus/tests//cache_runHelmholtz.py--domainsquare1',
E 'yamlInput': '',
E 'yamlOutput': ''}
E 2023-09-07 13:21:45 __main__
E Running: /opt/hostedtoolcache/Python/3.11.5/x64/bin/python3 runHelmholtz.py --domain square --test --testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runHelmholtz.py--domainsquare1 --skipPlots
E Open MPI v4.1.2, package: Debian OpenMPI, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021
E MPI standard supported: (3, 1)
E Vendor: ('Open MPI', (4, 1, 2))
E Level of thread support: multiple
E Is threaded: True
E Threads requested: True
E Thread level requested: multiple
E Hosts: fv-az283-77
E Communicator size: 1
E OMP_NUM_THREADS: not set
E numpy: 1.25.2
E scipy: 1.11.2
E mpi4py: 3.1.4
E cython: 3.0.2
E PyNucleus_base,fem,metisCy,multilevelSolver,nl,packageTools:1.1rc0
E
E 2023-09-07 13:21:45 __main__ setup levels in 0.000229 s
E 2023-09-07 13:21:45 root
E 0: Traceback (most recent call last):
E 0: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runHelmholtz.py", line 45, in <module>
E hierarchies, connectors = paramsForMG(p.noRef,
E ^^^^^^^
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1624, in getter
E builder()
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1491, in __call__
E self.fun(*args)
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_fem/pdeProblems.py", line 225, in processProblem
E self.rhs = (np.vdot(xi, xi)-self.frequency**2) * self.solEx
E ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E 0: TypeError: unsupported operand type(s) for *: 'float' and 'PyNucleus_fem.functions.waveFunction'
E
E --------------------------------------------------------------------------
E MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
E with errorcode 1234.
E
E NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
E You may or may not see output from other processes, depending on
E exactly when Open MPI kills them.
E --------------------------------------------------------------------------
/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py:1412: AssertionError
Check failure on line 0 in test-results-3.11.xml
github-actions / Test report (Python 3.11)
pytest ► tests.test_base ► testParallelGMG[1-interval-P2-False]
Failed test found in:
test-results-3.11.xml
Error:
ranks = 1, domain = 'interval', element = 'P2', symmetric = False, extra = []
Raw output
ranks = 1, domain = 'interval', element = 'P2', symmetric = False, extra = []
def testParallelGMG(ranks, domain, element, symmetric, extra):
base = getPath()+'/../'
py = ['runParallelGMG.py',
'--domain', domain,
'--element', element]
if symmetric:
py.append('--symmetric')
path = base+'drivers'
cacheDir = getPath()+'/'
> runDriver(path, py, ranks=ranks, cacheDir=cacheDir, relTol=3e-2, extra=extra)
tests/drivers_base.py:62:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
path = '/home/runner/work/PyNucleus/PyNucleus/tests/../drivers'
py = ['runParallelGMG.py', '--domain', 'interval', '--element', 'P2', '--test', ...]
python = '/opt/hostedtoolcache/Python/3.11.5/x64/bin/python3', timeout = 600
ranks = 1, cacheDir = '/home/runner/work/PyNucleus/PyNucleus/tests/'
overwriteCache = False, aTol = 1e-12, relTol = 0.03, extra = None
def runDriver(path, py, python=None, timeout=600, ranks=None, cacheDir='',
overwriteCache=False,
aTol=1e-12, relTol=1e-2, extra=None):
from subprocess import Popen, PIPE, TimeoutExpired
import logging
import os
from pathlib import Path
logger = logging.getLogger('__main__')
if not isinstance(py, (list, tuple)):
py = [py]
autotesterOutput = Path('/home/caglusa/autotester/html')
if autotesterOutput.exists():
plotDir = autotesterOutput/('test-plots/'+''.join(py)+'/')
else:
extra = None
if cacheDir != '':
cache = cacheDir+'/cache_' + ''.join(py)
runOutput = cacheDir+'/run_' + ''.join(py)
if ranks is not None:
cache += str(ranks)
runOutput += str(ranks)
py += ['--test', '--testCache={}'.format(cache)]
if overwriteCache:
py += ['--overwriteCache']
else:
py += ['--test']
if extra is not None:
plotDir.mkdir(exist_ok=True, parents=True)
py += ['--plotFolder={}'.format(plotDir), '--plotFormat=png']
else:
py += ['--skipPlots']
assert (Path(path)/py[0]).exists(), 'Driver \"{}\" does not exist'.format(Path(path)/py[0])
if ranks is None:
ranks = 1
if python is None:
import sys
python = sys.executable
cmd = [python] + py
if 'MPIEXEC_FLAGS' in os.environ:
mpi_flags = str(os.environ['MPIEXEC_FLAGS'])
else:
mpi_flags = '--bind-to none'
cmd = ['mpiexec'] + mpi_flags.split(' ') + ['-n', str(ranks)]+cmd
logger.info('Launching "{}" from "{}"'.format(' '.join(cmd), path))
my_env = {}
for key in os.environ:
if key.find('OMPI') == -1:
my_env[key] = os.environ[key]
proc = Popen(cmd, cwd=path,
stdout=PIPE, stderr=PIPE,
universal_newlines=True,
env=my_env)
try:
stdout, stderr = proc.communicate(timeout=timeout)
except TimeoutExpired:
proc.kill()
raise
if len(stdout) > 0:
logger.info(stdout)
if len(stderr) > 0:
logger.error(stderr)
> assert proc.returncode == 0, stderr+'\n\n'+stdout
E AssertionError: 2023-09-07 13:21:51 __main__
E {'checkSolution': False,
E 'commType': 'standard',
E 'debugOverlaps': False,
E 'disableFileLog': False,
E 'disableHeader': False,
E 'disableTimeStamps': False,
E 'displayConfig': True,
E 'displayRanks': False,
E 'doBICGSTAB': False,
E 'doCG': False,
E 'doFMG': True,
E 'doFMGPCG': True,
E 'doFMGPGMRES': True,
E 'doGMRES': False,
E 'doMG': True,
E 'doPBICGSTAB': True,
E 'doPCG': True,
E 'doPCoarsen': False,
E 'doPGMRES': True,
E 'domain': 'interval',
E 'element': 'P2',
E 'hdf5Input': '',
E 'hdf5Output': '',
E 'logDependencies': False,
E 'logProperties': '',
E 'maxiter': 50,
E 'mpiGlobalCommSize': 1,
E 'noRef': 14,
E 'overwriteCache': False,
E 'partitioner': 'regular',
E 'partitionerParams': {},
E 'plotFolder': '',
E 'plotFormat': 'pdf',
E 'plot_residuals': False,
E 'plot_spSolve': True,
E 'plot_spSolveError': True,
E 'plot_spSolveExactSolution': True,
E 'problem': 'sin',
E 'reorder': False,
E 'saveVTK': False,
E 'showDependencyGraph': False,
E 'showMemory': False,
E 'showTimers': True,
E 'skipPlots': True,
E 'smoother': 'jacobi',
E 'symmetric': False,
E 'test': True,
E 'testCache': '/home/runner/work/PyNucleus/PyNucleus/tests//cache_runParallelGMG.py--domaininterval--elementP21',
E 'yamlInput': '',
E 'yamlOutput': ''}
E 2023-09-07 13:21:51 __main__
E Running: /opt/hostedtoolcache/Python/3.11.5/x64/bin/python3 runParallelGMG.py --domain interval --element P2 --test --testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runParallelGMG.py--domaininterval--elementP21 --skipPlots
E Open MPI v4.1.2, package: Debian OpenMPI, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021
E MPI standard supported: (3, 1)
E Vendor: ('Open MPI', (4, 1, 2))
E Level of thread support: multiple
E Is threaded: True
E Threads requested: True
E Thread level requested: multiple
E Hosts: fv-az283-77
E Communicator size: 1
E OMP_NUM_THREADS: not set
E numpy: 1.25.2
E scipy: 1.11.2
E mpi4py: 3.1.4
E cython: 3.0.2
E PyNucleus_base,fem,metisCy,multilevelSolver,nl,packageTools:1.1rc0
E
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 0.000174 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.connectors Initializing mesh on 'seed' in 0.00131 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.000147 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 6.9e-05 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.000153 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 7e-05 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.000148 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 8.91e-05 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.000143 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 0.000102 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.000149 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 0.000105 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.000164 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 0.000135 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.000179 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 0.000206 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.000297 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 0.000394 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.000353 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 0.000627 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.000544 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Assembled matrices in 0.00167 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 0.000681 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 0.0003 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 0.000163 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 7.56e-05 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 4.02e-05 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 2.26e-05 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 1.36e-05 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 9.6e-06 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 7.4e-06 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 5.9e-06 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Build algebraic overlaps of type 'standard' in 5.2e-05 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 0.00167 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.connectors Repartitioning from 'seed' to 'fine' using 'regular' in 0.0346 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.connectors Building algebraic overlaps of type 'standard' from 'seed' to 'fine' using Alltoallv in 0.00137 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.connectors Building distribute from 'seed' to 'fine' in 0.000376 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.000752 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined interfaces in 4.6e-06 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Build algebraic overlaps of type 'standard' in 2.75e-05 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 0.00229 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.00135 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined interfaces in 2.8e-06 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Build algebraic overlaps of type 'standard' in 3.01e-05 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Prepared sparsity patterns in 0.00375 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined mesh in 0.00265 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Refined interfaces in 2.9e-06 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Build algebraic overlaps of type 'standard' in 3.94e-05 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Assembled matrices in 0.0121 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 0.00489 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 0.00244 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.levels Restrict stiffness matrix in 0.00134 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.hierarchies Build multilevel overlaps in 0.000154 s
E 2023-09-07 13:21:51 PyNucleus_multilevelSolver.hierarchies
E 0
E input -
E seed 0 o
E seed 1 o
E seed 2 o
E seed 3 o
E seed 4 o
E seed 5 o
E seed 6 o
E seed 7 o
E seed 8 o
E seed 9 o
E seed 10 o
E breakUp_seed:1 -
E fine 10 o
E fine 11 o
E fine 12 o
E fine 13 o
E 2023-09-07 13:21:51 __main__ setup levels in 0.102 s
E 2023-09-07 13:21:51 __main__ Assemble rhs on finest grid in 0.00692 s
E 2023-09-07 13:21:51 __main__ Setup solver in 0.00742 s
E 2023-09-07 13:21:51 __main__
E Subdomains: 1
E Refinement steps: 14
E Elements: 16,384
E DoFs: 32,767
E h: 6.1e-05
E hmin: 6.1e-05
E Tolerance: 2e-09
E
E 2023-09-07 13:21:51 __main__
E level unknowns nnz nnz/row solver
E ------- ---------- ------- --------- ----------------------------------
E 3 32,767 131,063 3.99985 Jacobi (2/2 sweeps, 0.667 damping)
E 2 16,383 65,527 3.99969 Jacobi (2/2 sweeps, 0.667 damping)
E 1 8,191 32,759 3.99939 Jacobi (2/2 sweeps, 0.667 damping)
E 0 4,095 16,375 3.99878 LU
E
E 2023-09-07 13:21:51 __main__ Solve MG in 0.0163 s
E 2023-09-07 13:21:51 __main__ Solve FMG in 0.00843 s
E 2023-09-07 13:21:51 __main__ Solve PCG in 0.0136 s
E 2023-09-07 13:21:51 __main__ Solve PGMRES in 0.0169 s
E 2023-09-07 13:21:51 __main__ Solve PBICGSTAB in 0.0231 s
E 2023-09-07 13:21:51 __main__ Solve FMG-PCG in 0.00834 s
E 2023-09-07 13:21:51 __main__ Solve FMG-PGMRES in 0.00847 s
E 2023-09-07 13:21:51 __main__ Mass matrix in 0.0108 s
E 2023-09-07 13:21:51 __main__
E Rate of convergence MG: 0.0575
E Rate of convergence FMG: 0.00325
E Rate of convergence PCG: 0.0052
E Rate of convergence PGMRES: 0.0149
E Rate of convergence PBICGSTAB: 0.000201
E Rate of convergence FMG-PCG: 1.26e-07
E Rate of convergence FMG-PGMRES: 3.74e-08
E Number of iterations MG: 6
E Number of iterations FMG: 3
E Number of iterations PCG: 3
E Number of iterations PGMRES: 4
E Number of iterations PBICGSTAB: 2
E Number of iterations FMG-PCG: 1
E Number of iterations FMG-PGMRES: 1
E Residual norm MG: 1.47e-09
E Residual norm FMG: 1.4e-09
E Residual norm PCG: 5.72e-09
E Residual norm PGMRES: 1.99e-09
E Residual norm PBICGSTAB: 1.64e-09
E Residual norm FMG-PCG: 5.11e-09
E Residual norm FMG-PGMRES: 1.52e-09
E L^2 error: 3.49e-08
E H^1_0 error: 0.000106
E 2023-09-07 13:21:51 __main__
E timer numCalls minCall meanCall maxCall sum
E --------------------------- ---------- ---------- ---------- ---------- ----------
E setup levels 1 0.101905 0.101905 0.101905 0.101905
E Assemble rhs on finest grid 1 0.00691755 0.00691755 0.00691755 0.00691755
E Setup solver 1 0.00742096 0.00742096 0.00742096 0.00742096
E Solve MG 1 0.0162656 0.0162656 0.0162656 0.0162656
E Solve FMG 1 0.00842936 0.00842936 0.00842936 0.00842936
E Solve PCG 1 0.0135736 0.0135736 0.0135736 0.0135736
E Solve PGMRES 1 0.0169438 0.0169438 0.0169438 0.0169438
E Solve PBICGSTAB 1 0.0230533 0.0230533 0.0230533 0.0230533
E Solve FMG-PCG 1 0.00834186 0.00834186 0.00834186 0.00834186
E Solve FMG-PGMRES 1 0.00846966 0.00846966 0.00846966 0.00846966
E Mass matrix 1 0.0108055 0.0108055 0.0108055 0.0108055
E total 1 0.248221 0.248221 0.248221 0.248221
E 2023-09-07 13:21:51 root
E 0: Traceback (most recent call last):
E 0: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runParallelGMG.py", line 307, in <module>
E d.finish()
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1307, in finish
E self.saveOutput()
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1190, in saveOutput
E assert False, 'No match (observed, expected)\n' + str(pformat(diff))
E 0: AssertionError: No match (observed, expected)
E {'errors': {'L^2 error': (3.494632065164618e-08, 1.0536712127723509e-08)}}
E
E --------------------------------------------------------------------------
E MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
E with errorcode 1234.
E
E NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
E You may or may not see output from other processes, depending on
E exactly when Open MPI kills them.
E --------------------------------------------------------------------------
E
E
E cells kept local on rank 0 in repartitioning: 1.0 / target: 1.0
E L^2 error 3.494632065164618e-08 1.0536712127723509e-08 2.0 1e-12 2.0 None
/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py:1412: AssertionError
Check failure on line 0 in test-results-3.11.xml
github-actions / Test report (Python 3.11)
pytest ► tests.test_drivers_intFracLapl ► testNonlocal[interval-fractional-poly-Neumann-lu-dense]
Failed test found in:
test-results-3.11.xml
Error:
runNonlocal_params = ('interval', 'fractional', 'poly-Neumann', 'lu', 'dense')Raw output
runNonlocal_params = ('interval', 'fractional', 'poly-Neumann', 'lu', 'dense')
extra = []
@pytest.mark.slow
def testNonlocal(runNonlocal_params, extra):
domain, kernel, problem, solver, matrixFormat = runNonlocal_params
base = getPath()+'/../'
py = ['runNonlocal.py',
'--domain', domain,
'--kernelType', kernel,
'--problem', problem,
'--solver', solver,
'--matrixFormat', matrixFormat]
# if kernel != 'fractional':
path = base+'drivers'
cacheDir = getPath()+'/'
if problem == 'poly-Neumann' and domain == 'square':
return pytest.skip('not implemented')
> runDriver(path, py, cacheDir=cacheDir, extra=extra)
tests/test_drivers_intFracLapl.py:69:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
path = '/home/runner/work/PyNucleus/PyNucleus/tests/../drivers'
py = ['runNonlocal.py', '--domain', 'interval', '--kernelType', 'fractional', '--problem', ...]
python = '/opt/hostedtoolcache/Python/3.11.5/x64/bin/python3', timeout = 600
ranks = 1, cacheDir = '/home/runner/work/PyNucleus/PyNucleus/tests/'
overwriteCache = False, aTol = 1e-12, relTol = 0.01, extra = None
def runDriver(path, py, python=None, timeout=600, ranks=None, cacheDir='',
overwriteCache=False,
aTol=1e-12, relTol=1e-2, extra=None):
from subprocess import Popen, PIPE, TimeoutExpired
import logging
import os
from pathlib import Path
logger = logging.getLogger('__main__')
if not isinstance(py, (list, tuple)):
py = [py]
autotesterOutput = Path('/home/caglusa/autotester/html')
if autotesterOutput.exists():
plotDir = autotesterOutput/('test-plots/'+''.join(py)+'/')
else:
extra = None
if cacheDir != '':
cache = cacheDir+'/cache_' + ''.join(py)
runOutput = cacheDir+'/run_' + ''.join(py)
if ranks is not None:
cache += str(ranks)
runOutput += str(ranks)
py += ['--test', '--testCache={}'.format(cache)]
if overwriteCache:
py += ['--overwriteCache']
else:
py += ['--test']
if extra is not None:
plotDir.mkdir(exist_ok=True, parents=True)
py += ['--plotFolder={}'.format(plotDir), '--plotFormat=png']
else:
py += ['--skipPlots']
assert (Path(path)/py[0]).exists(), 'Driver \"{}\" does not exist'.format(Path(path)/py[0])
if ranks is None:
ranks = 1
if python is None:
import sys
python = sys.executable
cmd = [python] + py
if 'MPIEXEC_FLAGS' in os.environ:
mpi_flags = str(os.environ['MPIEXEC_FLAGS'])
else:
mpi_flags = '--bind-to none'
cmd = ['mpiexec'] + mpi_flags.split(' ') + ['-n', str(ranks)]+cmd
logger.info('Launching "{}" from "{}"'.format(' '.join(cmd), path))
my_env = {}
for key in os.environ:
if key.find('OMPI') == -1:
my_env[key] = os.environ[key]
proc = Popen(cmd, cwd=path,
stdout=PIPE, stderr=PIPE,
universal_newlines=True,
env=my_env)
try:
stdout, stderr = proc.communicate(timeout=timeout)
except TimeoutExpired:
proc.kill()
raise
if len(stdout) > 0:
logger.info(stdout)
if len(stderr) > 0:
logger.error(stderr)
> assert proc.returncode == 0, stderr+'\n\n'+stdout
E AssertionError: 2023-09-07 13:22:10 __main__
E {'debugAssemblyTimes': False,
E 'disableFileLog': False,
E 'disableHeader': False,
E 'disableTimeStamps': False,
E 'discretizedOrder': False,
E 'displayConfig': True,
E 'displayRanks': False,
E 'domain': 'interval',
E 'element': 'P1',
E 'hdf5Input': '',
E 'hdf5Output': '',
E 'horizon': 0.2,
E 'interaction': 'ball2',
E 'kernelType': 'fractional',
E 'logDependencies': False,
E 'logProperties': '',
E 'matrixFormat': 'dense',
E 'maxiter': 100,
E 'mpiGlobalCommSize': 1,
E 'noRef': 8,
E 'normalized': True,
E 'overwriteCache': False,
E 'phi': 'const(1.)',
E 'plotFolder': '',
E 'plotFormat': 'pdf',
E 'plot_analyticSolution': True,
E 'plot_error': True,
E 'plot_solution': True,
E 'problem': 'poly-Neumann',
E 'quadType': 'auto',
E 'quadTypeBoundary': 'auto',
E 's': 'const(0.4)',
E 'showDependencyGraph': False,
E 'showMemory': False,
E 'showTimers': True,
E 'skipPlots': True,
E 'solverType': 'lu',
E 'target_order': -1.0,
E 'test': True,
E 'testCache': '/home/runner/work/PyNucleus/PyNucleus/tests//cache_runNonlocal.py--domaininterval--kernelTypefractional--problempoly-Neumann--solverlu--matrixFormatdense',
E 'tol': 1e-06,
E 'yamlInput': '',
E 'yamlOutput': ''}
E 2023-09-07 13:22:10 __main__
E Running: /opt/hostedtoolcache/Python/3.11.5/x64/bin/python3 runNonlocal.py --domain interval --kernelType fractional --problem poly-Neumann --solver lu --matrixFormat dense --test --testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runNonlocal.py--domaininterval--kernelTypefractional--problempoly-Neumann--solverlu--matrixFormatdense --skipPlots
E Open MPI v4.1.2, package: Debian OpenMPI, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021
E MPI standard supported: (3, 1)
E Vendor: ('Open MPI', (4, 1, 2))
E Level of thread support: multiple
E Is threaded: True
E Threads requested: True
E Thread level requested: multiple
E Hosts: fv-az283-77
E Communicator size: 1
E OMP_NUM_THREADS: not set
E numpy: 1.25.2
E scipy: 1.11.2
E mpi4py: 3.1.4
E cython: 3.0.2
E PyNucleus_base,fem,metisCy,multilevelSolver,nl,packageTools:1.1rc0
E
E 2023-09-07 13:22:10 PyNucleus_multilevelSolver.connectors Initializing mesh on 'fine' in 0.000205 s
E 2023-09-07 13:22:10 PyNucleus_multilevelSolver.levels Refined mesh in 0.000173 s
E 2023-09-07 13:22:10 PyNucleus_multilevelSolver.levels Refined mesh in 0.000149 s
E 2023-09-07 13:22:10 PyNucleus_multilevelSolver.levels Refined mesh in 0.000151 s
E 2023-09-07 13:22:10 PyNucleus_multilevelSolver.levels Refined mesh in 0.000208 s
E 2023-09-07 13:22:10 PyNucleus_multilevelSolver.levels Refined mesh in 0.000251 s
E 2023-09-07 13:22:10 PyNucleus_multilevelSolver.levels Refined mesh in 0.000317 s
E 2023-09-07 13:22:10 PyNucleus_multilevelSolver.levels Refined mesh in 0.000401 s
E 2023-09-07 13:22:10 PyNucleus_multilevelSolver.levels Refined mesh in 0.00071 s
E 2023-09-07 13:22:10 __main__ hierarchy - meshes in 0.0161 s
E 2023-09-07 13:22:12 PyNucleus_nl.helpers Assemble dense matrix kernel(fractional, 0.4, |x-y|_2 <= 0.2, constantFractionalLaplacianScaling(0.4,0.2 -> 4.139188984383644)), zeroExterior=False in 2.03 s
E 2023-09-07 13:22:12 PyNucleus_multilevelSolver.levels Assembled matrices in 2.03 s
E 2023-09-07 13:22:12 __main__ hierarchy - matrices in 2.03 s
E 2023-09-07 13:22:13 __main__ solve discretizedNonlocalProblem in 0.00991 s
E 2023-09-07 13:22:13 root
E 0: Traceback (most recent call last):
E 0: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runNonlocal.py", line 44, in <module>
E discrProblem.report(results)
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_nl/discretizedProblems.py", line 595, in report
E group.add('matrix memory size', self.A.getMemorySize())
E ^^^^^^^^^^^^^^^^^^^^
E 0: AttributeError: 'PyNucleus_base.linear_operators.TimeStepperLinearO' object has no attribute 'getMemorySize'
E
E --------------------------------------------------------------------------
E MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
E with errorcode 1234.
E
E NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
E You may or may not see output from other processes, depending on
E exactly when Open MPI kills them.
E --------------------------------------------------------------------------
/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py:1412: AssertionError
Check failure on line 0 in test-results-3.11.xml
github-actions / Test report (Python 3.11)
pytest ► tests.test_drivers_intFracLapl ► testNonlocal[interval-constant-poly-Neumann-lu-dense]
Failed test found in:
test-results-3.11.xml
Error:
runNonlocal_params = ('interval', 'constant', 'poly-Neumann', 'lu', 'dense')Raw output
runNonlocal_params = ('interval', 'constant', 'poly-Neumann', 'lu', 'dense')
extra = []
@pytest.mark.slow
def testNonlocal(runNonlocal_params, extra):
domain, kernel, problem, solver, matrixFormat = runNonlocal_params
base = getPath()+'/../'
py = ['runNonlocal.py',
'--domain', domain,
'--kernelType', kernel,
'--problem', problem,
'--solver', solver,
'--matrixFormat', matrixFormat]
# if kernel != 'fractional':
path = base+'drivers'
cacheDir = getPath()+'/'
if problem == 'poly-Neumann' and domain == 'square':
return pytest.skip('not implemented')
> runDriver(path, py, cacheDir=cacheDir, extra=extra)
tests/test_drivers_intFracLapl.py:69:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
path = '/home/runner/work/PyNucleus/PyNucleus/tests/../drivers'
py = ['runNonlocal.py', '--domain', 'interval', '--kernelType', 'constant', '--problem', ...]
python = '/opt/hostedtoolcache/Python/3.11.5/x64/bin/python3', timeout = 600
ranks = 1, cacheDir = '/home/runner/work/PyNucleus/PyNucleus/tests/'
overwriteCache = False, aTol = 1e-12, relTol = 0.01, extra = None
def runDriver(path, py, python=None, timeout=600, ranks=None, cacheDir='',
overwriteCache=False,
aTol=1e-12, relTol=1e-2, extra=None):
from subprocess import Popen, PIPE, TimeoutExpired
import logging
import os
from pathlib import Path
logger = logging.getLogger('__main__')
if not isinstance(py, (list, tuple)):
py = [py]
autotesterOutput = Path('/home/caglusa/autotester/html')
if autotesterOutput.exists():
plotDir = autotesterOutput/('test-plots/'+''.join(py)+'/')
else:
extra = None
if cacheDir != '':
cache = cacheDir+'/cache_' + ''.join(py)
runOutput = cacheDir+'/run_' + ''.join(py)
if ranks is not None:
cache += str(ranks)
runOutput += str(ranks)
py += ['--test', '--testCache={}'.format(cache)]
if overwriteCache:
py += ['--overwriteCache']
else:
py += ['--test']
if extra is not None:
plotDir.mkdir(exist_ok=True, parents=True)
py += ['--plotFolder={}'.format(plotDir), '--plotFormat=png']
else:
py += ['--skipPlots']
assert (Path(path)/py[0]).exists(), 'Driver \"{}\" does not exist'.format(Path(path)/py[0])
if ranks is None:
ranks = 1
if python is None:
import sys
python = sys.executable
cmd = [python] + py
if 'MPIEXEC_FLAGS' in os.environ:
mpi_flags = str(os.environ['MPIEXEC_FLAGS'])
else:
mpi_flags = '--bind-to none'
cmd = ['mpiexec'] + mpi_flags.split(' ') + ['-n', str(ranks)]+cmd
logger.info('Launching "{}" from "{}"'.format(' '.join(cmd), path))
my_env = {}
for key in os.environ:
if key.find('OMPI') == -1:
my_env[key] = os.environ[key]
proc = Popen(cmd, cwd=path,
stdout=PIPE, stderr=PIPE,
universal_newlines=True,
env=my_env)
try:
stdout, stderr = proc.communicate(timeout=timeout)
except TimeoutExpired:
proc.kill()
raise
if len(stdout) > 0:
logger.info(stdout)
if len(stderr) > 0:
logger.error(stderr)
> assert proc.returncode == 0, stderr+'\n\n'+stdout
E AssertionError: 2023-09-07 13:22:22 __main__
E {'debugAssemblyTimes': False,
E 'disableFileLog': False,
E 'disableHeader': False,
E 'disableTimeStamps': False,
E 'discretizedOrder': False,
E 'displayConfig': True,
E 'displayRanks': False,
E 'domain': 'interval',
E 'element': 'P1',
E 'hdf5Input': '',
E 'hdf5Output': '',
E 'horizon': 0.2,
E 'interaction': 'ball2',
E 'kernelType': 'constant',
E 'logDependencies': False,
E 'logProperties': '',
E 'matrixFormat': 'dense',
E 'maxiter': 100,
E 'mpiGlobalCommSize': 1,
E 'noRef': 8,
E 'normalized': True,
E 'overwriteCache': False,
E 'phi': 'const(1.)',
E 'plotFolder': '',
E 'plotFormat': 'pdf',
E 'plot_analyticSolution': True,
E 'plot_error': True,
E 'plot_solution': True,
E 'problem': 'poly-Neumann',
E 'quadType': 'auto',
E 'quadTypeBoundary': 'auto',
E 's': 'const(0.4)',
E 'showDependencyGraph': False,
E 'showMemory': False,
E 'showTimers': True,
E 'skipPlots': True,
E 'solverType': 'lu',
E 'target_order': -1.0,
E 'test': True,
E 'testCache': '/home/runner/work/PyNucleus/PyNucleus/tests//cache_runNonlocal.py--domaininterval--kernelTypeconstant--problempoly-Neumann--solverlu--matrixFormatdense',
E 'tol': 1e-06,
E 'yamlInput': '',
E 'yamlOutput': ''}
E 2023-09-07 13:22:22 __main__
E Running: /opt/hostedtoolcache/Python/3.11.5/x64/bin/python3 runNonlocal.py --domain interval --kernelType constant --problem poly-Neumann --solver lu --matrixFormat dense --test --testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runNonlocal.py--domaininterval--kernelTypeconstant--problempoly-Neumann--solverlu--matrixFormatdense --skipPlots
E Open MPI v4.1.2, package: Debian OpenMPI, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021
E MPI standard supported: (3, 1)
E Vendor: ('Open MPI', (4, 1, 2))
E Level of thread support: multiple
E Is threaded: True
E Threads requested: True
E Thread level requested: multiple
E Hosts: fv-az283-77
E Communicator size: 1
E OMP_NUM_THREADS: not set
E numpy: 1.25.2
E scipy: 1.11.2
E mpi4py: 3.1.4
E cython: 3.0.2
E PyNucleus_base,fem,metisCy,multilevelSolver,nl,packageTools:1.1rc0
E
E 2023-09-07 13:22:22 PyNucleus_multilevelSolver.connectors Initializing mesh on 'fine' in 0.000106 s
E 2023-09-07 13:22:22 PyNucleus_multilevelSolver.levels Refined mesh in 0.000365 s
E 2023-09-07 13:22:22 PyNucleus_multilevelSolver.levels Refined mesh in 0.00022 s
E 2023-09-07 13:22:22 PyNucleus_multilevelSolver.levels Refined mesh in 0.000161 s
E 2023-09-07 13:22:22 PyNucleus_multilevelSolver.levels Refined mesh in 0.000176 s
E 2023-09-07 13:22:22 PyNucleus_multilevelSolver.levels Refined mesh in 0.00021 s
E 2023-09-07 13:22:22 PyNucleus_multilevelSolver.levels Refined mesh in 0.000323 s
E 2023-09-07 13:22:22 PyNucleus_multilevelSolver.levels Refined mesh in 0.000413 s
E 2023-09-07 13:22:22 PyNucleus_multilevelSolver.levels Refined mesh in 0.000662 s
E 2023-09-07 13:22:22 __main__ hierarchy - meshes in 0.0173 s
E 2023-09-07 13:22:24 PyNucleus_nl.helpers Assemble dense matrix Kernel(indicator, |x-y|_2 <= 0.2, constantIntegrableScaling(0.2 -> 187.49999999999994)), zeroExterior=False in 1.75 s
E 2023-09-07 13:22:24 PyNucleus_multilevelSolver.levels Assembled matrices in 1.76 s
E 2023-09-07 13:22:24 __main__ hierarchy - matrices in 1.76 s
E 2023-09-07 13:22:25 __main__ solve discretizedNonlocalProblem in 0.00994 s
E 2023-09-07 13:22:25 root
E 0: Traceback (most recent call last):
E 0: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runNonlocal.py", line 44, in <module>
E discrProblem.report(results)
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_nl/discretizedProblems.py", line 595, in report
E group.add('matrix memory size', self.A.getMemorySize())
E ^^^^^^^^^^^^^^^^^^^^
E 0: AttributeError: 'PyNucleus_base.linear_operators.TimeStepperLinearO' object has no attribute 'getMemorySize'
E
E --------------------------------------------------------------------------
E MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
E with errorcode 1234.
E
E NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
E You may or may not see output from other processes, depending on
E exactly when Open MPI kills them.
E --------------------------------------------------------------------------
/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py:1412: AssertionError
Check failure on line 0 in test-results-3.11.xml
github-actions / Test report (Python 3.11)
pytest ► tests.test_drivers_intFracLapl ► testNonlocal[interval-inverseDistance-poly-Neumann-lu-dense]
Failed test found in:
test-results-3.11.xml
Error:
runNonlocal_params = ('interval', 'inverseDistance', 'poly-Neumann', 'lu', 'dense')Raw output
runNonlocal_params = ('interval', 'inverseDistance', 'poly-Neumann', 'lu', 'dense')
extra = []
@pytest.mark.slow
def testNonlocal(runNonlocal_params, extra):
domain, kernel, problem, solver, matrixFormat = runNonlocal_params
base = getPath()+'/../'
py = ['runNonlocal.py',
'--domain', domain,
'--kernelType', kernel,
'--problem', problem,
'--solver', solver,
'--matrixFormat', matrixFormat]
# if kernel != 'fractional':
path = base+'drivers'
cacheDir = getPath()+'/'
if problem == 'poly-Neumann' and domain == 'square':
return pytest.skip('not implemented')
> runDriver(path, py, cacheDir=cacheDir, extra=extra)
tests/test_drivers_intFracLapl.py:69:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
path = '/home/runner/work/PyNucleus/PyNucleus/tests/../drivers'
py = ['runNonlocal.py', '--domain', 'interval', '--kernelType', 'inverseDistance', '--problem', ...]
python = '/opt/hostedtoolcache/Python/3.11.5/x64/bin/python3', timeout = 600
ranks = 1, cacheDir = '/home/runner/work/PyNucleus/PyNucleus/tests/'
overwriteCache = False, aTol = 1e-12, relTol = 0.01, extra = None
def runDriver(path, py, python=None, timeout=600, ranks=None, cacheDir='',
overwriteCache=False,
aTol=1e-12, relTol=1e-2, extra=None):
from subprocess import Popen, PIPE, TimeoutExpired
import logging
import os
from pathlib import Path
logger = logging.getLogger('__main__')
if not isinstance(py, (list, tuple)):
py = [py]
autotesterOutput = Path('/home/caglusa/autotester/html')
if autotesterOutput.exists():
plotDir = autotesterOutput/('test-plots/'+''.join(py)+'/')
else:
extra = None
if cacheDir != '':
cache = cacheDir+'/cache_' + ''.join(py)
runOutput = cacheDir+'/run_' + ''.join(py)
if ranks is not None:
cache += str(ranks)
runOutput += str(ranks)
py += ['--test', '--testCache={}'.format(cache)]
if overwriteCache:
py += ['--overwriteCache']
else:
py += ['--test']
if extra is not None:
plotDir.mkdir(exist_ok=True, parents=True)
py += ['--plotFolder={}'.format(plotDir), '--plotFormat=png']
else:
py += ['--skipPlots']
assert (Path(path)/py[0]).exists(), 'Driver \"{}\" does not exist'.format(Path(path)/py[0])
if ranks is None:
ranks = 1
if python is None:
import sys
python = sys.executable
cmd = [python] + py
if 'MPIEXEC_FLAGS' in os.environ:
mpi_flags = str(os.environ['MPIEXEC_FLAGS'])
else:
mpi_flags = '--bind-to none'
cmd = ['mpiexec'] + mpi_flags.split(' ') + ['-n', str(ranks)]+cmd
logger.info('Launching "{}" from "{}"'.format(' '.join(cmd), path))
my_env = {}
for key in os.environ:
if key.find('OMPI') == -1:
my_env[key] = os.environ[key]
proc = Popen(cmd, cwd=path,
stdout=PIPE, stderr=PIPE,
universal_newlines=True,
env=my_env)
try:
stdout, stderr = proc.communicate(timeout=timeout)
except TimeoutExpired:
proc.kill()
raise
if len(stdout) > 0:
logger.info(stdout)
if len(stderr) > 0:
logger.error(stderr)
> assert proc.returncode == 0, stderr+'\n\n'+stdout
E AssertionError: 2023-09-07 13:22:33 __main__
E {'debugAssemblyTimes': False,
E 'disableFileLog': False,
E 'disableHeader': False,
E 'disableTimeStamps': False,
E 'discretizedOrder': False,
E 'displayConfig': True,
E 'displayRanks': False,
E 'domain': 'interval',
E 'element': 'P1',
E 'hdf5Input': '',
E 'hdf5Output': '',
E 'horizon': 0.2,
E 'interaction': 'ball2',
E 'kernelType': 'inverseDistance',
E 'logDependencies': False,
E 'logProperties': '',
E 'matrixFormat': 'dense',
E 'maxiter': 100,
E 'mpiGlobalCommSize': 1,
E 'noRef': 8,
E 'normalized': True,
E 'overwriteCache': False,
E 'phi': 'const(1.)',
E 'plotFolder': '',
E 'plotFormat': 'pdf',
E 'plot_analyticSolution': True,
E 'plot_error': True,
E 'plot_solution': True,
E 'problem': 'poly-Neumann',
E 'quadType': 'auto',
E 'quadTypeBoundary': 'auto',
E 's': 'const(0.4)',
E 'showDependencyGraph': False,
E 'showMemory': False,
E 'showTimers': True,
E 'skipPlots': True,
E 'solverType': 'lu',
E 'target_order': -1.0,
E 'test': True,
E 'testCache': '/home/runner/work/PyNucleus/PyNucleus/tests//cache_runNonlocal.py--domaininterval--kernelTypeinverseDistance--problempoly-Neumann--solverlu--matrixFormatdense',
E 'tol': 1e-06,
E 'yamlInput': '',
E 'yamlOutput': ''}
E 2023-09-07 13:22:33 __main__
E Running: /opt/hostedtoolcache/Python/3.11.5/x64/bin/python3 runNonlocal.py --domain interval --kernelType inverseDistance --problem poly-Neumann --solver lu --matrixFormat dense --test --testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runNonlocal.py--domaininterval--kernelTypeinverseDistance--problempoly-Neumann--solverlu--matrixFormatdense --skipPlots
E Open MPI v4.1.2, package: Debian OpenMPI, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021
E MPI standard supported: (3, 1)
E Vendor: ('Open MPI', (4, 1, 2))
E Level of thread support: multiple
E Is threaded: True
E Threads requested: True
E Thread level requested: multiple
E Hosts: fv-az283-77
E Communicator size: 1
E OMP_NUM_THREADS: not set
E numpy: 1.25.2
E scipy: 1.11.2
E mpi4py: 3.1.4
E cython: 3.0.2
E PyNucleus_base,fem,metisCy,multilevelSolver,nl,packageTools:1.1rc0
E
E 2023-09-07 13:22:33 PyNucleus_multilevelSolver.connectors Initializing mesh on 'fine' in 0.000131 s
E 2023-09-07 13:22:33 PyNucleus_multilevelSolver.levels Refined mesh in 0.000258 s
E 2023-09-07 13:22:33 PyNucleus_multilevelSolver.levels Refined mesh in 0.00015 s
E 2023-09-07 13:22:33 PyNucleus_multilevelSolver.levels Refined mesh in 0.000154 s
E 2023-09-07 13:22:33 PyNucleus_multilevelSolver.levels Refined mesh in 0.00019 s
E 2023-09-07 13:22:33 PyNucleus_multilevelSolver.levels Refined mesh in 0.000185 s
E 2023-09-07 13:22:33 PyNucleus_multilevelSolver.levels Refined mesh in 0.00041 s
E 2023-09-07 13:22:33 PyNucleus_multilevelSolver.levels Refined mesh in 0.000366 s
E 2023-09-07 13:22:33 PyNucleus_multilevelSolver.levels Refined mesh in 0.000587 s
E 2023-09-07 13:22:33 __main__ hierarchy - meshes in 0.0151 s
E 2023-09-07 13:22:35 PyNucleus_nl.helpers Assemble dense matrix Kernel(peridynamic, |x-y|_2 <= 0.2, constantIntegrableScaling(0.2 -> 24.999999999999996)), zeroExterior=False in 1.78 s
E 2023-09-07 13:22:35 PyNucleus_multilevelSolver.levels Assembled matrices in 1.79 s
E 2023-09-07 13:22:35 __main__ hierarchy - matrices in 1.79 s
E 2023-09-07 13:22:36 __main__ solve discretizedNonlocalProblem in 0.0107 s
E 2023-09-07 13:22:36 root
E 0: Traceback (most recent call last):
E 0: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runNonlocal.py", line 44, in <module>
E discrProblem.report(results)
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_nl/discretizedProblems.py", line 595, in report
E group.add('matrix memory size', self.A.getMemorySize())
E ^^^^^^^^^^^^^^^^^^^^
E 0: AttributeError: 'PyNucleus_base.linear_operators.TimeStepperLinearO' object has no attribute 'getMemorySize'
E
E --------------------------------------------------------------------------
E MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
E with errorcode 1234.
E
E NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
E You may or may not see output from other processes, depending on
E exactly when Open MPI kills them.
E --------------------------------------------------------------------------
/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py:1412: AssertionError
Check failure on line 0 in test-results-3.11.xml
github-actions / Test report (Python 3.11)
pytest ► tests.test_drivers_intFracLapl ► testNonlocal[interval-fractional-poly-Neumann-lu-H2]
Failed test found in:
test-results-3.11.xml
Error:
runNonlocal_params = ('interval', 'fractional', 'poly-Neumann', 'lu', 'H2')Raw output
runNonlocal_params = ('interval', 'fractional', 'poly-Neumann', 'lu', 'H2')
extra = []
@pytest.mark.slow
def testNonlocal(runNonlocal_params, extra):
domain, kernel, problem, solver, matrixFormat = runNonlocal_params
base = getPath()+'/../'
py = ['runNonlocal.py',
'--domain', domain,
'--kernelType', kernel,
'--problem', problem,
'--solver', solver,
'--matrixFormat', matrixFormat]
# if kernel != 'fractional':
path = base+'drivers'
cacheDir = getPath()+'/'
if problem == 'poly-Neumann' and domain == 'square':
return pytest.skip('not implemented')
> runDriver(path, py, cacheDir=cacheDir, extra=extra)
tests/test_drivers_intFracLapl.py:69:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
path = '/home/runner/work/PyNucleus/PyNucleus/tests/../drivers'
py = ['runNonlocal.py', '--domain', 'interval', '--kernelType', 'fractional', '--problem', ...]
python = '/opt/hostedtoolcache/Python/3.11.5/x64/bin/python3', timeout = 600
ranks = 1, cacheDir = '/home/runner/work/PyNucleus/PyNucleus/tests/'
overwriteCache = False, aTol = 1e-12, relTol = 0.01, extra = None
def runDriver(path, py, python=None, timeout=600, ranks=None, cacheDir='',
overwriteCache=False,
aTol=1e-12, relTol=1e-2, extra=None):
from subprocess import Popen, PIPE, TimeoutExpired
import logging
import os
from pathlib import Path
logger = logging.getLogger('__main__')
if not isinstance(py, (list, tuple)):
py = [py]
autotesterOutput = Path('/home/caglusa/autotester/html')
if autotesterOutput.exists():
plotDir = autotesterOutput/('test-plots/'+''.join(py)+'/')
else:
extra = None
if cacheDir != '':
cache = cacheDir+'/cache_' + ''.join(py)
runOutput = cacheDir+'/run_' + ''.join(py)
if ranks is not None:
cache += str(ranks)
runOutput += str(ranks)
py += ['--test', '--testCache={}'.format(cache)]
if overwriteCache:
py += ['--overwriteCache']
else:
py += ['--test']
if extra is not None:
plotDir.mkdir(exist_ok=True, parents=True)
py += ['--plotFolder={}'.format(plotDir), '--plotFormat=png']
else:
py += ['--skipPlots']
assert (Path(path)/py[0]).exists(), 'Driver \"{}\" does not exist'.format(Path(path)/py[0])
if ranks is None:
ranks = 1
if python is None:
import sys
python = sys.executable
cmd = [python] + py
if 'MPIEXEC_FLAGS' in os.environ:
mpi_flags = str(os.environ['MPIEXEC_FLAGS'])
else:
mpi_flags = '--bind-to none'
cmd = ['mpiexec'] + mpi_flags.split(' ') + ['-n', str(ranks)]+cmd
logger.info('Launching "{}" from "{}"'.format(' '.join(cmd), path))
my_env = {}
for key in os.environ:
if key.find('OMPI') == -1:
my_env[key] = os.environ[key]
proc = Popen(cmd, cwd=path,
stdout=PIPE, stderr=PIPE,
universal_newlines=True,
env=my_env)
try:
stdout, stderr = proc.communicate(timeout=timeout)
except TimeoutExpired:
proc.kill()
raise
if len(stdout) > 0:
logger.info(stdout)
if len(stderr) > 0:
logger.error(stderr)
> assert proc.returncode == 0, stderr+'\n\n'+stdout
E AssertionError: 2023-09-07 13:24:47 __main__
E {'debugAssemblyTimes': False,
E 'disableFileLog': False,
E 'disableHeader': False,
E 'disableTimeStamps': False,
E 'discretizedOrder': False,
E 'displayConfig': True,
E 'displayRanks': False,
E 'domain': 'interval',
E 'element': 'P1',
E 'hdf5Input': '',
E 'hdf5Output': '',
E 'horizon': 0.2,
E 'interaction': 'ball2',
E 'kernelType': 'fractional',
E 'logDependencies': False,
E 'logProperties': '',
E 'matrixFormat': 'H2',
E 'maxiter': 100,
E 'mpiGlobalCommSize': 1,
E 'noRef': 8,
E 'normalized': True,
E 'overwriteCache': False,
E 'phi': 'const(1.)',
E 'plotFolder': '',
E 'plotFormat': 'pdf',
E 'plot_analyticSolution': True,
E 'plot_error': True,
E 'plot_solution': True,
E 'problem': 'poly-Neumann',
E 'quadType': 'auto',
E 'quadTypeBoundary': 'auto',
E 's': 'const(0.4)',
E 'showDependencyGraph': False,
E 'showMemory': False,
E 'showTimers': True,
E 'skipPlots': True,
E 'solverType': 'lu',
E 'target_order': -1.0,
E 'test': True,
E 'testCache': '/home/runner/work/PyNucleus/PyNucleus/tests//cache_runNonlocal.py--domaininterval--kernelTypefractional--problempoly-Neumann--solverlu--matrixFormatH2',
E 'tol': 1e-06,
E 'yamlInput': '',
E 'yamlOutput': ''}
E 2023-09-07 13:24:47 __main__
E Running: /opt/hostedtoolcache/Python/3.11.5/x64/bin/python3 runNonlocal.py --domain interval --kernelType fractional --problem poly-Neumann --solver lu --matrixFormat H2 --test --testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runNonlocal.py--domaininterval--kernelTypefractional--problempoly-Neumann--solverlu--matrixFormatH2 --skipPlots
E Open MPI v4.1.2, package: Debian OpenMPI, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021
E MPI standard supported: (3, 1)
E Vendor: ('Open MPI', (4, 1, 2))
E Level of thread support: multiple
E Is threaded: True
E Threads requested: True
E Thread level requested: multiple
E Hosts: fv-az283-77
E Communicator size: 1
E OMP_NUM_THREADS: not set
E numpy: 1.25.2
E scipy: 1.11.2
E mpi4py: 3.1.4
E cython: 3.0.2
E PyNucleus_base,fem,metisCy,multilevelSolver,nl,packageTools:1.1rc0
E
E 2023-09-07 13:24:47 PyNucleus_multilevelSolver.connectors Initializing mesh on 'fine' in 0.000151 s
E 2023-09-07 13:24:47 PyNucleus_multilevelSolver.levels Refined mesh in 0.000167 s
E 2023-09-07 13:24:47 PyNucleus_multilevelSolver.levels Refined mesh in 0.000184 s
E 2023-09-07 13:24:47 PyNucleus_multilevelSolver.levels Refined mesh in 0.000146 s
E 2023-09-07 13:24:47 PyNucleus_multilevelSolver.levels Refined mesh in 0.000163 s
E 2023-09-07 13:24:47 PyNucleus_multilevelSolver.levels Refined mesh in 0.00019 s
E 2023-09-07 13:24:47 PyNucleus_multilevelSolver.levels Refined mesh in 0.000274 s
E 2023-09-07 13:24:47 PyNucleus_multilevelSolver.levels Refined mesh in 0.000537 s
E 2023-09-07 13:24:47 PyNucleus_multilevelSolver.levels Refined mesh in 0.000605 s
E 2023-09-07 13:24:47 __main__ hierarchy - meshes in 0.0162 s
E 2023-09-07 13:24:49 PyNucleus_nl.nonlocalLaplacian interpolation_order: 11, maxLevels: 200, minClusterSize: 5, minMixedClusterSize: 5, minFarFieldBlockSize: 121, eta: 1.0
E 2023-09-07 13:24:49 PyNucleus_nl.nonlocalLaplacian Anear: <3073x3073 SSS_LinearOperator with 135577 stored elements>
E 2023-09-07 13:24:49 PyNucleus_nl.nonlocalLaplacian <3073x3073 H2Matrix 0.014357 fill from near field, 0.016675 fill from tree, 0.037825 fill from clusters, 1023 tree nodes, 2952 far-field cluster pairs>
E 2023-09-07 13:24:49 PyNucleus_nl.helpers Assemble H2 matrix kernel(fractional, 0.4, |x-y|_2 <= 0.2, constantFractionalLaplacianScaling(0.4,0.2 -> 4.139188984383644)), zeroExterior=False in 1.86 s
E 2023-09-07 13:24:49 PyNucleus_multilevelSolver.levels Assembled matrices in 1.87 s
E 2023-09-07 13:24:49 __main__ hierarchy - matrices in 1.87 s
E 2023-09-07 13:24:50 __main__ solve discretizedNonlocalProblem in 0.0101 s
E 2023-09-07 13:24:50 root
E 0: Traceback (most recent call last):
E 0: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runNonlocal.py", line 44, in <module>
E discrProblem.report(results)
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_nl/discretizedProblems.py", line 595, in report
E group.add('matrix memory size', self.A.getMemorySize())
E ^^^^^^^^^^^^^^^^^^^^
E 0: AttributeError: 'PyNucleus_base.linear_operators.TimeStepperLinearO' object has no attribute 'getMemorySize'
E
E --------------------------------------------------------------------------
E MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
E with errorcode 1234.
E
E NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
E You may or may not see output from other processes, depending on
E exactly when Open MPI kills them.
E --------------------------------------------------------------------------
/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py:1412: AssertionError
Check failure on line 0 in test-results-3.11.xml
github-actions / Test report (Python 3.11)
pytest ► tests.test_drivers_intFracLapl ► testNonlocal[interval-constant-poly-Neumann-lu-H2]
Failed test found in:
test-results-3.11.xml
Error:
runNonlocal_params = ('interval', 'constant', 'poly-Neumann', 'lu', 'H2')Raw output
runNonlocal_params = ('interval', 'constant', 'poly-Neumann', 'lu', 'H2')
extra = []
@pytest.mark.slow
def testNonlocal(runNonlocal_params, extra):
domain, kernel, problem, solver, matrixFormat = runNonlocal_params
base = getPath()+'/../'
py = ['runNonlocal.py',
'--domain', domain,
'--kernelType', kernel,
'--problem', problem,
'--solver', solver,
'--matrixFormat', matrixFormat]
# if kernel != 'fractional':
path = base+'drivers'
cacheDir = getPath()+'/'
if problem == 'poly-Neumann' and domain == 'square':
return pytest.skip('not implemented')
> runDriver(path, py, cacheDir=cacheDir, extra=extra)
tests/test_drivers_intFracLapl.py:69:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
path = '/home/runner/work/PyNucleus/PyNucleus/tests/../drivers'
py = ['runNonlocal.py', '--domain', 'interval', '--kernelType', 'constant', '--problem', ...]
python = '/opt/hostedtoolcache/Python/3.11.5/x64/bin/python3', timeout = 600
ranks = 1, cacheDir = '/home/runner/work/PyNucleus/PyNucleus/tests/'
overwriteCache = False, aTol = 1e-12, relTol = 0.01, extra = None
def runDriver(path, py, python=None, timeout=600, ranks=None, cacheDir='',
overwriteCache=False,
aTol=1e-12, relTol=1e-2, extra=None):
from subprocess import Popen, PIPE, TimeoutExpired
import logging
import os
from pathlib import Path
logger = logging.getLogger('__main__')
if not isinstance(py, (list, tuple)):
py = [py]
autotesterOutput = Path('/home/caglusa/autotester/html')
if autotesterOutput.exists():
plotDir = autotesterOutput/('test-plots/'+''.join(py)+'/')
else:
extra = None
if cacheDir != '':
cache = cacheDir+'/cache_' + ''.join(py)
runOutput = cacheDir+'/run_' + ''.join(py)
if ranks is not None:
cache += str(ranks)
runOutput += str(ranks)
py += ['--test', '--testCache={}'.format(cache)]
if overwriteCache:
py += ['--overwriteCache']
else:
py += ['--test']
if extra is not None:
plotDir.mkdir(exist_ok=True, parents=True)
py += ['--plotFolder={}'.format(plotDir), '--plotFormat=png']
else:
py += ['--skipPlots']
assert (Path(path)/py[0]).exists(), 'Driver \"{}\" does not exist'.format(Path(path)/py[0])
if ranks is None:
ranks = 1
if python is None:
import sys
python = sys.executable
cmd = [python] + py
if 'MPIEXEC_FLAGS' in os.environ:
mpi_flags = str(os.environ['MPIEXEC_FLAGS'])
else:
mpi_flags = '--bind-to none'
cmd = ['mpiexec'] + mpi_flags.split(' ') + ['-n', str(ranks)]+cmd
logger.info('Launching "{}" from "{}"'.format(' '.join(cmd), path))
my_env = {}
for key in os.environ:
if key.find('OMPI') == -1:
my_env[key] = os.environ[key]
proc = Popen(cmd, cwd=path,
stdout=PIPE, stderr=PIPE,
universal_newlines=True,
env=my_env)
try:
stdout, stderr = proc.communicate(timeout=timeout)
except TimeoutExpired:
proc.kill()
raise
if len(stdout) > 0:
logger.info(stdout)
if len(stderr) > 0:
logger.error(stderr)
> assert proc.returncode == 0, stderr+'\n\n'+stdout
E AssertionError: 2023-09-07 13:24:56 __main__
E {'debugAssemblyTimes': False,
E 'disableFileLog': False,
E 'disableHeader': False,
E 'disableTimeStamps': False,
E 'discretizedOrder': False,
E 'displayConfig': True,
E 'displayRanks': False,
E 'domain': 'interval',
E 'element': 'P1',
E 'hdf5Input': '',
E 'hdf5Output': '',
E 'horizon': 0.2,
E 'interaction': 'ball2',
E 'kernelType': 'constant',
E 'logDependencies': False,
E 'logProperties': '',
E 'matrixFormat': 'H2',
E 'maxiter': 100,
E 'mpiGlobalCommSize': 1,
E 'noRef': 8,
E 'normalized': True,
E 'overwriteCache': False,
E 'phi': 'const(1.)',
E 'plotFolder': '',
E 'plotFormat': 'pdf',
E 'plot_analyticSolution': True,
E 'plot_error': True,
E 'plot_solution': True,
E 'problem': 'poly-Neumann',
E 'quadType': 'auto',
E 'quadTypeBoundary': 'auto',
E 's': 'const(0.4)',
E 'showDependencyGraph': False,
E 'showMemory': False,
E 'showTimers': True,
E 'skipPlots': True,
E 'solverType': 'lu',
E 'target_order': -1.0,
E 'test': True,
E 'testCache': '/home/runner/work/PyNucleus/PyNucleus/tests//cache_runNonlocal.py--domaininterval--kernelTypeconstant--problempoly-Neumann--solverlu--matrixFormatH2',
E 'tol': 1e-06,
E 'yamlInput': '',
E 'yamlOutput': ''}
E 2023-09-07 13:24:56 __main__
E Running: /opt/hostedtoolcache/Python/3.11.5/x64/bin/python3 runNonlocal.py --domain interval --kernelType constant --problem poly-Neumann --solver lu --matrixFormat H2 --test --testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runNonlocal.py--domaininterval--kernelTypeconstant--problempoly-Neumann--solverlu--matrixFormatH2 --skipPlots
E Open MPI v4.1.2, package: Debian OpenMPI, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021
E MPI standard supported: (3, 1)
E Vendor: ('Open MPI', (4, 1, 2))
E Level of thread support: multiple
E Is threaded: True
E Threads requested: True
E Thread level requested: multiple
E Hosts: fv-az283-77
E Communicator size: 1
E OMP_NUM_THREADS: not set
E numpy: 1.25.2
E scipy: 1.11.2
E mpi4py: 3.1.4
E cython: 3.0.2
E PyNucleus_base,fem,metisCy,multilevelSolver,nl,packageTools:1.1rc0
E
E 2023-09-07 13:24:56 PyNucleus_multilevelSolver.connectors Initializing mesh on 'fine' in 0.000111 s
E 2023-09-07 13:24:56 PyNucleus_multilevelSolver.levels Refined mesh in 0.00019 s
E 2023-09-07 13:24:56 PyNucleus_multilevelSolver.levels Refined mesh in 0.00014 s
E 2023-09-07 13:24:56 PyNucleus_multilevelSolver.levels Refined mesh in 0.000174 s
E 2023-09-07 13:24:56 PyNucleus_multilevelSolver.levels Refined mesh in 0.000214 s
E 2023-09-07 13:24:56 PyNucleus_multilevelSolver.levels Refined mesh in 0.000205 s
E 2023-09-07 13:24:56 PyNucleus_multilevelSolver.levels Refined mesh in 0.000249 s
E 2023-09-07 13:24:56 PyNucleus_multilevelSolver.levels Refined mesh in 0.000472 s
E 2023-09-07 13:24:56 PyNucleus_multilevelSolver.levels Refined mesh in 0.000678 s
E 2023-09-07 13:24:56 __main__ hierarchy - meshes in 0.0158 s
E 2023-09-07 13:24:57 PyNucleus_nl.nonlocalLaplacian interpolation_order: 12, maxLevels: 200, minClusterSize: 6, minMixedClusterSize: 6, minFarFieldBlockSize: 144, eta: 1.0
E 2023-09-07 13:24:57 PyNucleus_nl.nonlocalLaplacian Anear: <3073x3073 SSS_LinearOperator with 135577 stored elements>
E 2023-09-07 13:24:57 PyNucleus_nl.nonlocalLaplacian <3073x3073 H2Matrix 0.014357 fill from near field, 0.019489 fill from tree, 0.045015 fill from clusters, 1023 tree nodes, 2952 far-field cluster pairs>
E 2023-09-07 13:24:57 PyNucleus_nl.helpers Assemble H2 matrix Kernel(indicator, |x-y|_2 <= 0.2, constantIntegrableScaling(0.2 -> 187.49999999999994)), zeroExterior=False in 0.74 s
E 2023-09-07 13:24:57 PyNucleus_multilevelSolver.levels Assembled matrices in 0.75 s
E 2023-09-07 13:24:57 __main__ hierarchy - matrices in 0.75 s
E 2023-09-07 13:24:58 __main__ solve discretizedNonlocalProblem in 0.00939 s
E 2023-09-07 13:24:58 root
E 0: Traceback (most recent call last):
E 0: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runNonlocal.py", line 44, in <module>
E discrProblem.report(results)
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_nl/discretizedProblems.py", line 595, in report
E group.add('matrix memory size', self.A.getMemorySize())
E ^^^^^^^^^^^^^^^^^^^^
E 0: AttributeError: 'PyNucleus_base.linear_operators.TimeStepperLinearO' object has no attribute 'getMemorySize'
E
E --------------------------------------------------------------------------
E MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
E with errorcode 1234.
E
E NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
E You may or may not see output from other processes, depending on
E exactly when Open MPI kills them.
E --------------------------------------------------------------------------
/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py:1412: AssertionError
Check failure on line 0 in test-results-3.11.xml
github-actions / Test report (Python 3.11)
pytest ► tests.test_drivers_intFracLapl ► testNonlocal[interval-inverseDistance-poly-Dirichlet-lu-H2]
Failed test found in:
test-results-3.11.xml
Error:
runNonlocal_params = ('interval', 'inverseDistance', 'poly-Dirichlet', 'lu', 'H2')Raw output
runNonlocal_params = ('interval', 'inverseDistance', 'poly-Dirichlet', 'lu', 'H2')
extra = []
@pytest.mark.slow
def testNonlocal(runNonlocal_params, extra):
domain, kernel, problem, solver, matrixFormat = runNonlocal_params
base = getPath()+'/../'
py = ['runNonlocal.py',
'--domain', domain,
'--kernelType', kernel,
'--problem', problem,
'--solver', solver,
'--matrixFormat', matrixFormat]
# if kernel != 'fractional':
path = base+'drivers'
cacheDir = getPath()+'/'
if problem == 'poly-Neumann' and domain == 'square':
return pytest.skip('not implemented')
> runDriver(path, py, cacheDir=cacheDir, extra=extra)
tests/test_drivers_intFracLapl.py:69:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
path = '/home/runner/work/PyNucleus/PyNucleus/tests/../drivers'
py = ['runNonlocal.py', '--domain', 'interval', '--kernelType', 'inverseDistance', '--problem', ...]
python = '/opt/hostedtoolcache/Python/3.11.5/x64/bin/python3', timeout = 600
ranks = 1, cacheDir = '/home/runner/work/PyNucleus/PyNucleus/tests/'
overwriteCache = False, aTol = 1e-12, relTol = 0.01, extra = None
def runDriver(path, py, python=None, timeout=600, ranks=None, cacheDir='',
overwriteCache=False,
aTol=1e-12, relTol=1e-2, extra=None):
from subprocess import Popen, PIPE, TimeoutExpired
import logging
import os
from pathlib import Path
logger = logging.getLogger('__main__')
if not isinstance(py, (list, tuple)):
py = [py]
autotesterOutput = Path('/home/caglusa/autotester/html')
if autotesterOutput.exists():
plotDir = autotesterOutput/('test-plots/'+''.join(py)+'/')
else:
extra = None
if cacheDir != '':
cache = cacheDir+'/cache_' + ''.join(py)
runOutput = cacheDir+'/run_' + ''.join(py)
if ranks is not None:
cache += str(ranks)
runOutput += str(ranks)
py += ['--test', '--testCache={}'.format(cache)]
if overwriteCache:
py += ['--overwriteCache']
else:
py += ['--test']
if extra is not None:
plotDir.mkdir(exist_ok=True, parents=True)
py += ['--plotFolder={}'.format(plotDir), '--plotFormat=png']
else:
py += ['--skipPlots']
assert (Path(path)/py[0]).exists(), 'Driver \"{}\" does not exist'.format(Path(path)/py[0])
if ranks is None:
ranks = 1
if python is None:
import sys
python = sys.executable
cmd = [python] + py
if 'MPIEXEC_FLAGS' in os.environ:
mpi_flags = str(os.environ['MPIEXEC_FLAGS'])
else:
mpi_flags = '--bind-to none'
cmd = ['mpiexec'] + mpi_flags.split(' ') + ['-n', str(ranks)]+cmd
logger.info('Launching "{}" from "{}"'.format(' '.join(cmd), path))
my_env = {}
for key in os.environ:
if key.find('OMPI') == -1:
my_env[key] = os.environ[key]
proc = Popen(cmd, cwd=path,
stdout=PIPE, stderr=PIPE,
universal_newlines=True,
env=my_env)
try:
stdout, stderr = proc.communicate(timeout=timeout)
except TimeoutExpired:
proc.kill()
raise
if len(stdout) > 0:
logger.info(stdout)
if len(stderr) > 0:
logger.error(stderr)
> assert proc.returncode == 0, stderr+'\n\n'+stdout
E AssertionError: 2023-09-07 13:25:00 __main__
E {'debugAssemblyTimes': False,
E 'disableFileLog': False,
E 'disableHeader': False,
E 'disableTimeStamps': False,
E 'discretizedOrder': False,
E 'displayConfig': True,
E 'displayRanks': False,
E 'domain': 'interval',
E 'element': 'P1',
E 'hdf5Input': '',
E 'hdf5Output': '',
E 'horizon': 0.2,
E 'interaction': 'ball2',
E 'kernelType': 'inverseDistance',
E 'logDependencies': False,
E 'logProperties': '',
E 'matrixFormat': 'H2',
E 'maxiter': 100,
E 'mpiGlobalCommSize': 1,
E 'noRef': 8,
E 'normalized': True,
E 'overwriteCache': False,
E 'phi': 'const(1.)',
E 'plotFolder': '',
E 'plotFormat': 'pdf',
E 'plot_analyticSolution': True,
E 'plot_error': True,
E 'plot_solution': True,
E 'problem': 'poly-Dirichlet',
E 'quadType': 'auto',
E 'quadTypeBoundary': 'auto',
E 's': 'const(0.4)',
E 'showDependencyGraph': False,
E 'showMemory': False,
E 'showTimers': True,
E 'skipPlots': True,
E 'solverType': 'lu',
E 'target_order': -1.0,
E 'test': True,
E 'testCache': '/home/runner/work/PyNucleus/PyNucleus/tests//cache_runNonlocal.py--domaininterval--kernelTypeinverseDistance--problempoly-Dirichlet--solverlu--matrixFormatH2',
E 'tol': 1e-06,
E 'yamlInput': '',
E 'yamlOutput': ''}
E 2023-09-07 13:25:00 __main__
E Running: /opt/hostedtoolcache/Python/3.11.5/x64/bin/python3 runNonlocal.py --domain interval --kernelType inverseDistance --problem poly-Dirichlet --solver lu --matrixFormat H2 --test --testCache=/home/runner/work/PyNucleus/PyNucleus/tests//cache_runNonlocal.py--domaininterval--kernelTypeinverseDistance--problempoly-Dirichlet--solverlu--matrixFormatH2 --skipPlots
E Open MPI v4.1.2, package: Debian OpenMPI, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021
E MPI standard supported: (3, 1)
E Vendor: ('Open MPI', (4, 1, 2))
E Level of thread support: multiple
E Is threaded: True
E Threads requested: True
E Thread level requested: multiple
E Hosts: fv-az283-77
E Communicator size: 1
E OMP_NUM_THREADS: not set
E numpy: 1.25.2
E scipy: 1.11.2
E mpi4py: 3.1.4
E cython: 3.0.2
E PyNucleus_base,fem,metisCy,multilevelSolver,nl,packageTools:1.1rc0
E
E 2023-09-07 13:25:00 PyNucleus_multilevelSolver.connectors Initializing mesh on 'fine' in 0.000102 s
E 2023-09-07 13:25:00 PyNucleus_multilevelSolver.levels Refined mesh in 0.000253 s
E 2023-09-07 13:25:00 PyNucleus_multilevelSolver.levels Refined mesh in 0.000155 s
E 2023-09-07 13:25:00 PyNucleus_multilevelSolver.levels Refined mesh in 0.000144 s
E 2023-09-07 13:25:00 PyNucleus_multilevelSolver.levels Refined mesh in 0.000148 s
E 2023-09-07 13:25:00 PyNucleus_multilevelSolver.levels Refined mesh in 0.000219 s
E 2023-09-07 13:25:00 PyNucleus_multilevelSolver.levels Refined mesh in 0.000255 s
E 2023-09-07 13:25:00 PyNucleus_multilevelSolver.levels Refined mesh in 0.000383 s
E 2023-09-07 13:25:00 PyNucleus_multilevelSolver.levels Refined mesh in 0.000936 s
E 2023-09-07 13:25:00 __main__ hierarchy - meshes in 0.00926 s
E 2023-09-07 13:25:01 PyNucleus_nl.nonlocalLaplacian interpolation_order: 12, maxLevels: 200, minClusterSize: 6, minMixedClusterSize: 6, minFarFieldBlockSize: 144, eta: 1.0
E 2023-09-07 13:25:01 PyNucleus_nl.nonlocalLaplacian Anear: <3073x3073 SSS_LinearOperator with 135577 stored elements>
E 2023-09-07 13:25:01 PyNucleus_nl.nonlocalLaplacian <3073x3073 H2Matrix 0.014357 fill from near field, 0.019489 fill from tree, 0.045015 fill from clusters, 1023 tree nodes, 2952 far-field cluster pairs>
E 2023-09-07 13:25:01 PyNucleus_nl.helpers Assemble H2 matrix Kernel(peridynamic, |x-y|_2 <= 0.2, constantIntegrableScaling(0.2 -> 24.999999999999996)), zeroExterior=False in 0.75 s
E 2023-09-07 13:25:02 PyNucleus_nl.nonlocalLaplacian interpolation_order: 12, maxLevels: 200, minClusterSize: 6, minMixedClusterSize: 6, minFarFieldBlockSize: 144, eta: 1.0
E 2023-09-07 13:25:02 PyNucleus_nl.nonlocalLaplacian Anear: <2559x2559 SSS_LinearOperator with 208890 stored elements>
E 2023-09-07 13:25:03 PyNucleus_nl.nonlocalLaplacian <2559x2559 H2Matrix 0.031899 fill from near field, 0.015904 fill from tree, 0.024145 fill from clusters, 511 tree nodes, 1098 far-field cluster pairs>
E 2023-09-07 13:25:03 PyNucleus_nl.helpers Assemble H2 matrix Kernel(peridynamic, |x-y|_2 <= 0.2, constantIntegrableScaling(0.2 -> 24.999999999999996)), zeroExterior=False in 1.4 s
E 2023-09-07 13:25:03 PyNucleus_multilevelSolver.levels Assembled matrices in 1.41 s
E 2023-09-07 13:25:03 __main__ hierarchy - matrices in 1.41 s
E 2023-09-07 13:25:03 __main__ solve discretizedNonlocalProblem in 0.00648 s
E 2023-09-07 13:25:03 __main__
E h: 0.000781
E hmin: 0.000781
E mesh quality: 1.0
E DoFMap: P1 DoFMap with 3073 DoFs and 0 boundary DoFs.
E Interior DoFMap: P1 DoFMap with 2559 DoFs and 514 boundary DoFs.
E Dirichlet DoFMap: P1 DoFMap with 514 DoFs and 2559 boundary DoFs.
E matrix memory size: 4,604,764
E solver: lu
E L2 error interpolated: 3.65e-08
E relative interpolated L2 error: 3.49e-08
E Linf error interpolated: 3.89e-08
E relative interpolated Linf error: 3.89e-08
E 2023-09-07 13:25:03 __main__
E timer numCalls minCall meanCall maxCall sum
E -------------------------------- ---------- ---------- ---------- ---------- ----------
E hierarchy - meshes 1 0.00925726 0.00925726 0.00925726 0.00925726
E hierarchy - matrices 1 1.40726 1.40726 1.40726 1.40726
E solve discretizedNonlocalProblem 1 0.00648034 0.00648034 0.00648034 0.00648034
E total 1 2.79349 2.79349 2.79349 2.79349
E 2023-09-07 13:25:03 root
E 0: Traceback (most recent call last):
E 0: File "/home/runner/work/PyNucleus/PyNucleus/drivers/runNonlocal.py", line 65, in <module>
E d.finish()
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1307, in finish
E self.saveOutput()
E 0: File "/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py", line 1190, in saveOutput
E assert False, 'No match (observed, expected)\n' + str(pformat(diff))
E 0: AssertionError: No match (observed, expected)
E {'errors': {'L2 error interpolated': (3.645334428710421e-08,
E 2.0677307416367313e-07),
E 'Linf error interpolated': (3.885486876686883e-08,
E 2.2039557501241092e-07),
E 'relative interpolated L2 error': (3.4894724904771207e-08,
E 1.9793217005902312e-07),
E 'relative interpolated Linf error': (3.885486876686883e-08,
E 2.2039557501241092e-07)}}
E
E --------------------------------------------------------------------------
E MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
E with errorcode 1234.
E
E NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
E You may or may not see output from other processes, depending on
E exactly when Open MPI kills them.
E --------------------------------------------------------------------------
E
E
E L2 error interpolated 3.645334428710421e-08 2.0677307416367313e-07 0.03 1e-08 0.03 1e-08
E relative interpolated L2 error 3.4894724904771207e-08 1.9793217005902312e-07 0.03 1e-08 0.03 1e-08
E Linf error interpolated 3.885486876686883e-08 2.2039557501241092e-07 0.03 1e-08 0.03 1e-08
E relative interpolated Linf error 3.885486876686883e-08 2.2039557501241092e-07 0.03 1e-08 0.03 1e-08
/opt/hostedtoolcache/Python/3.11.5/x64/lib/python3.11/site-packages/PyNucleus_base/utilsFem.py:1412: AssertionError
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