fix for hdf5 output #120
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| name: CI | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| workflow_dispatch: | |
| jobs: | |
| linux: | |
| strategy: | |
| matrix: | |
| include: | |
| - py-version: '3.10' | |
| c-compiler: 'gcc' | |
| cxx-compiler: 'g++' | |
| - py-version: '3.11' | |
| c-compiler: 'gcc' | |
| cxx-compiler: 'g++' | |
| - py-version: '3.10' | |
| c-compiler: 'clang' | |
| cxx-compiler: 'clang++' | |
| fail-fast: false | |
| name: ${{ matrix.c-compiler}} Python ${{ matrix.py-version }} | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 180 | |
| env: | |
| MPIEXEC_FLAGS: "--allow-run-as-root --oversubscribe" | |
| PYNUCLEUS_BUILD_PARALLELISM: 2 | |
| OMPI_CC: ${{ matrix.c-compiler }} | |
| OMPI_CXX: ${{ matrix.cxx-compiler }} | |
| steps: | |
| - name: Check out repo | |
| if: always() | |
| uses: actions/checkout@v3 | |
| - name: Pull ccache cache | |
| if: always() | |
| id: ccache-restore | |
| uses: actions/cache/restore@v3 | |
| with: | |
| path: /home/runner/.cache/ccache | |
| key: ccache-${{ matrix.c-compiler }}-${{ matrix.py-version }} | |
| - uses: actions/setup-python@v4 | |
| if: always() | |
| with: | |
| python-version: ${{ matrix.py-version }} | |
| - name: Install Ubuntu packages | |
| if: always() | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install mpi-default-bin mpi-default-dev libmetis-dev libparmetis-dev libsuitesparse-dev ccache | |
| - name: Get ccache config dir | |
| if: always() | |
| run: ccache --show-config | |
| - name: Install Python dependencies | |
| if: always() | |
| run: make prereq && make prereq-extra | |
| - name: Install | |
| if: always() | |
| run: python -m pip install wheel && python -m pip list && make install PIP_INSTALL_FLAGS="--no-use-pep517 -vvv" | |
| - name: Remove ccache cache | |
| if: ${{ steps.ccache-restore.outputs.cache-hit }} | |
| shell: bash | |
| env: | |
| GH_TOKEN: ${{ github.token }} | |
| run: | | |
| gh extension install actions/gh-actions-cache | |
| gh actions-cache delete ccache-${{ matrix.c-compiler}}-${{ matrix.py-version }} --confirm | |
| continue-on-error: true | |
| - name: Push ccache cache | |
| if: always() | |
| uses: actions/cache/save@v3 | |
| with: | |
| path: /home/runner/.cache/ccache | |
| key: ccache-${{ matrix.c-compiler }}-${{ matrix.py-version }} | |
| - name: Ccache report | |
| if: always() | |
| run: ccache -s | |
| - name: Run tests | |
| if: always() | |
| run: python3 -m pytest --junit-xml=test-results-${{ matrix.c-compiler }}-${{ matrix.py-version }}.xml tests/ | |
| - name: Run flake8 | |
| if: always() | |
| run: | | |
| make flake8 | |
| mv flake8.xml flake8-${{ matrix.c-compiler }}-${{ matrix.py-version }}.xml | |
| - name: Archive test results | |
| uses: actions/upload-artifact@v3 | |
| if: always() | |
| with: | |
| name: Test results | |
| path: test-results-${{ matrix.c-compiler }}-${{ matrix.py-version }}.xml | |
| - name: Report test results | |
| uses: dorny/test-reporter@v1 | |
| if: always() | |
| with: | |
| name: Test report (${{ matrix.c-compiler }}, Python ${{ matrix.py-version }}) | |
| path: test-results-${{ matrix.c-compiler }}-${{ matrix.py-version }}.xml | |
| reporter: java-junit | |
| fail-on-error: true | |
| - name: Report flake8 results | |
| uses: dorny/test-reporter@v1 | |
| if: always() | |
| with: | |
| name: Flake8 report (${{ matrix.c-compiler }}, Python ${{ matrix.py-version }}) | |
| path: flake8-${{ matrix.c-compiler }}-${{ matrix.py-version }}.xml | |
| reporter: java-junit | |
| fail-on-error: false |