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barakr committed Nov 2, 2023
1 parent 2d6f4e2 commit 1a71c0c
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions data/npctransport.proto
Original file line number Diff line number Diff line change
Expand Up @@ -131,7 +131,7 @@ message Configuration {
optional int32 is_xyz_hist_stats=35 [default=1]; // whether to use an xyz histogram instead of zr histogram (= whether to project x and y to sqrt(x^2+y^2)
optional double xyz_stats_crop_factor=40 [default=0.5]; // percentage of box to crop from each axis for xyz histogram (symmetrically), before adding 5 voxels for slack on each side
optional double xyz_stats_voxel_size_a=41 [default=10.0]; // size of voxel in A for xyz histogram
optional double xyz_stats_max_box_size_a=42 [default=2000.0]; // maximal size of box for xyz stats (before applying crop factor and adding 5 voxels for slack on each side)
optional double xyz_stats_max_box_size_a=42 [default=1000.0]; // maximal size of box for xyz stats (before applying crop factor and adding 5 voxels for slack on each side)
optional FloatRange tunnel_radius_k=36; // (Version 2.5+) if <=0, static radius, otherwise, k force constant for tunnel radius restraint
optional FloatRange pore_anchored_beads_k=37; // (Version 2.5+) if <=0, static anchors, otherwise, k force constant for beads anchored to pore
optional int32 is_backbone_harmonic=38 [default=0]; // whether backbone is an harmonic or linear potential
Expand Down Expand Up @@ -273,7 +273,7 @@ message Assignment {
optional int32 is_xyz_hist_stats=44 [default=1]; // whether to use an xyz histogram instead of zr histogram (= whether to project x and y to sqrt(x^2+y^2); if so output ot HDF5 file
optional double xyz_stats_crop_factor=49 [default=0.5]; // percentage of box to crop from each axis for xyz histogram (symmetrically).
optional double xyz_stats_voxel_size_a=50 [default=10.0]; // size of voxel in A for xyz histogram
optional double xyz_stats_max_box_size_a=51 [default=2000.0]; // maximal size of box for xyz stats
optional double xyz_stats_max_box_size_a=51 [default=1000.0]; // maximal size of box for xyz stats
optional FloatAssignment tunnel_radius_k=45; // (Version 2.5+) if <=0, static radius, otherwise, k for tunnel radius restraint
optional FloatAssignment pore_anchored_beads_k=46; // (Version 2.5+) if <=0, static anchors, otherwise, k force constant for beads anchored to pore
optional int32 is_backbone_harmonic=47 [default=1]; // whether backbone is an harmonic or linear potential
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